TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    28   4.4  
gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    27   9.8  

>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
               shotgun sequence
          Length = 1971884

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 302     FIQDISKMYPGRASASPSLDVLITLLS 328
               FI   SK  P   S SPS+DVL++LL+
Sbjct: 1476667 FIVQFSKTAPFDKSISPSVDVLVSLLA 1476747



 Score = 27.7 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 319    SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 369
              +L+ L  L+S      R L+ +    F +LST LKK + +    LL+ PH+
Sbjct: 707556 TLNKLF*LVSTFYIHCRLLITDVPHSFYFLST*LKKFSNSSTTYLLEKPHH 707404


>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
               shotgun sequence
          Length = 2540030

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 445     QDVDLFIKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEMALK 490
               +D+D    +L +  N VR  +T+A     A +NKA +  +E+  +K
Sbjct: 1200415 KDLDARQLQLTEAENAVRLRETKADETEKAQKNKANELLLEDEKVK 1200278


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,117,194
Number of Sequences: 9
Number of extensions: 55846
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 97
length of query: 504
length of database: 2,782,535
effective HSP length: 95
effective length of query: 409
effective length of database: 2,781,680
effective search space: 1137707120
effective search space used: 1137707120
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)