TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: genome.fa 32,746 sequences; 89,612,356 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 337 3e-92 gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 337 4e-92 gb|AAHK01000366.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 6.1 >gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506389, whole genome shotgun sequence Length = 16727 Score = 337 bits (864), Expect = 3e-92 Identities = 207/523 (39%), Positives = 296/523 (56%), Gaps = 68/523 (13%) Frame = +2 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 MN + + E VS YV+ G EA RA+E L+R +L Q +CPE G + +E LH+LA+ Sbjct: 10136 MNERALSLAEGFVSANYVQAGGEALRANERLVRSVLAQRRCPEKGMSDVAIEWLLHQLAL 10315 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVA+ LVARR+Y HGIGRSGDI + QPKAAGSSL++K+TN Sbjct: 10316 MDTNNFPAHVGAGEREGRVAAPLVARRNYGLAHGIGRSGDILSDQPKAAGSSLIHKLTNC 10495 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTL--------RHKRP---------KAK 163 ++L++++LAG S+ S V PMATGM+L+L L R + P + + Sbjct: 10496 MMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLRRDEKRKEMPDLLKGAVEDEPR 10675 Query: 164 YIIWPRIDQKSCFKSMVTAGFEPVVI-------------------ENVLEGDELRTDLKA 204 Y+IW RIDQK+ K + AGF P ++ E L L+ L Sbjct: 10676 YVIWARIDQKTALKCIEAAGFVPEIVELRHAPLQRKGTCGLGLGSETCLHPFFLQVHLDD 10855 Query: 205 VEAKIQEL-GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM 263 + A IQ + GP+H+LC+ STT+CFAPR+PD + +A C +IP+VVNNAYG+QS M Sbjct: 10856 IVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHCKFMNIPYVVNNAYGVQSRVIM 11035 Query: 264 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVL 323 + R+GRIDA VQS DKNF+VPVGGA+++G + ++ + +Y GRAS SP +D+ Sbjct: 11036 RRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHVVERAAALYAGRASISPIVDLF 11212 Query: 324 ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ------------------ 365 IT LS+G G+++L + R E+ + L++ A A E LL+ Sbjct: 11213 ITALSMGRGGFQRLWEVRYEVLNMVQQGLRRFAMARGEVLLEEEDVNDIAASASAAGSTG 11392 Query: 366 -----------TPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARA-VPLGNVQT 413 T N IS A+T+ T+ G + +G+ LF V+G R VP ++ Sbjct: 11393 AAATASCTVRGTHRNDISFAVTMHTVGGAAN--AKAIGARLFRGAVTGPRVIVPDSTIKQ 11566 Query: 414 VSGHTFRGFMSHADN-YPCAYLNAAAAIGMKMQDVDLFIKRLD 455 + G +FR + H D PC L A IG ++V ++RL+ Sbjct: 11567 LCGLSFRNYGMHTDEVLPCPLLVMACGIGTTAEEVRGVMERLE 11695 >gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507483, whole genome shotgun sequence Length = 14792 Score = 337 bits (863), Expect = 4e-92 Identities = 209/523 (39%), Positives = 296/523 (56%), Gaps = 68/523 (13%) Frame = -2 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 MN + + E VS YV+ G EA RA+E L+R +L Q +CPE G + +E LH+LA+ Sbjct: 14587 MNERALSLAEGFVSAHYVQAGGEALRANERLVRSVLAQRRCPEKGMSDVAIEWLLHQLAL 14408 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVA+ LVARR+Y HGIGRSGDI + QPKAAGSSL++K+TN Sbjct: 14407 MDTNNFPAHVGAGEREGRVAAPLVARRNYGLAHGIGRSGDILSDQPKAAGSSLIHKLTNC 14228 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTL----RHKRPK-------------AK 163 ++L++++LAG S+ S V PMATGM+L+L L R +R K + Sbjct: 14227 MMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLRRDERRKEMPDLLKGAVEDEPR 14048 Query: 164 YIIWPRIDQKSCFKSMVTAGFEPVVI-------------------ENVLEGDELRTDLKA 204 Y+IW RIDQK+ K + AGF P ++ E L L+ Sbjct: 14047 YVIWARIDQKTALKCIEAAGFVPELVELRHAPLQRKGTCGLGLGSETCLHPFFLQVHPDD 13868 Query: 205 VEAKIQEL-GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCM 263 + A IQ + GP+H+LC+ STT+CFAPR+PD + +A C +IP+VVNNAYG+QS M Sbjct: 13867 IVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHCKAINIPYVVNNAYGVQSRVIM 13688 Query: 264 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVL 323 + R+GRIDA VQS DKNF+VPVGGA+++G + ++ + +Y GRAS SP +D+ Sbjct: 13687 RRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHVVERAAALYAGRASISPIVDLF 13511 Query: 324 ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ------------------ 365 IT LS+G SG+++L R E+ + L++ A A E LL+ Sbjct: 13510 ITALSMGRSGFQRLWDVRYEVLNMVQQGLRRFAMARGEVLLEEEDVNDIAASASAAGFTG 13331 Query: 366 -----------TPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARA-VPLGNVQT 413 T N IS A+T+ T+ G + +G+ LF V+G R VP ++ Sbjct: 13330 AVATASCTVRGTNRNDISFAVTMHTVGGAAN--AKAIGARLFRGAVTGPRVIVPDSTIKQ 13157 Query: 414 VSGHTFRGFMSHADN-YPCAYLNAAAAIGMKMQDVDLFIKRLD 455 + G +FR + HAD PC L A IG ++V ++RL+ Sbjct: 13156 LCGLSFRNYGMHADEVLPCPLLVMACGIGTTAEEVRGVMERLE 13028 >gb|AAHK01000366.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503893, whole genome shotgun sequence Length = 39383 Score = 30.8 bits (68), Expect = 6.1 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = +2 Query: 395 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRL 454 LF VSG+ A+P N + GHT + +D+ Y + + +M D L + L Sbjct: 15137 LFIAAVSGSGALPCRNAAGIVGHTTMRWQHGSDHIMAPYRLTSRTLHCRMVDFWL-PEEL 15313 Query: 455 DKCLNIV 461 CL+++ Sbjct: 15314 HPCLSVI 15334 Database: genome.fa Posted date: Jan 19, 2010 5:13 PM Number of letters in database: 89,612,356 Number of sequences in database: 32,746 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,368,410 Number of Sequences: 32746 Number of extensions: 937128 Number of successful extensions: 4591 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3041 Number of HSP's successfully gapped in prelim test: 161 Number of HSP's that attempted gapping in prelim test: 997 Number of HSP's gapped (non-prelim): 3946 length of query: 504 length of database: 29,870,785 effective HSP length: 111 effective length of query: 393 effective length of database: 26,235,979 effective search space: 10310739747 effective search space used: 10310739747 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)