TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: genome.fa 5578 sequences; 78,051,097 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53... 258 e-111 gb|AAQY01002018.1| Phytophthora sojae strain P6497 Psojae_Cont20... 32 2.0 gb|AAQY01000325.1| Phytophthora sojae strain P6497 Psojae_Cont32... 31 4.5 gb|AAQY01000497.1| Phytophthora sojae strain P6497 Psojae_Cont49... 31 5.9 gb|AAQY01000221.1| Phytophthora sojae strain P6497 Psojae_Cont22... 31 5.9 gb|AAQY01000349.1| Phytophthora sojae strain P6497 Psojae_Cont34... 30 7.7 >gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53, whole genome shotgun sequence Length = 75531 Score = 258 bits (660), Expect(3) = e-111 Identities = 128/254 (50%), Positives = 177/254 (69%), Gaps = 7/254 (2%) Frame = +3 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 MN S A + V YV+QG +A R+ E L+ LL Q + P++GWD++++EL L L+ Sbjct: 22329 MNARSAALAQHLVPSTYVQQGLDAVRSREKLVTSLLAQRRLPDEGWDDASVELLLQTLSA 22508 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MDSNNF G+ G GERE RV S LVARRH+ HG+GRSGD++AVQPKAAGSSLL ++ N+ Sbjct: 22509 MDSNNFRGSAGAGEREARVFSPLVARRHFYLAHGVGRSGDVAAVQPKAAGSSLLVQLANA 22688 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV 180 L +V++LAG+ +V + V+P+ATGMSLTL L L+ +P A+Y+IWPRIDQKSCFKS+V Sbjct: 22689 LAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLKESKPHARYVIWPRIDQKSCFKSIV 22868 Query: 181 TAGFEPVVIENVL-------EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD 233 AG P+V+ NVL G L+TDL + A + + G + +L + STT+CFAPR D Sbjct: 22869 AAGLTPLVLANVLVEQEDGKPGGFLKTDLVGMTALMDQYGSDSVLAVMSTTSCFAPRAYD 23048 Query: 234 RLEELAVICANYDI 247 +EE+A +C ++ Sbjct: 23049 SVEEIAKLCEERNV 23090 Score = 139 bits (349), Expect(3) = e-111 Identities = 83/211 (39%), Positives = 113/211 (53%), Gaps = 55/211 (26%) Frame = +1 Query: 249 HVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK 308 HV+NNAYG+Q+SKC+H +++ R GR+DA VQSLDKNFMVPVGGAI+ + + ++K Sbjct: 23170 HVINNAYGVQASKCVHHVERAMRTGRVDAVVQSLDKNFMVPVGGAIVCSASREVVDRVAK 23349 Query: 309 MYPGRASASPSLDVLITLLSL------------------------GCSGYRKLLKERKEM 344 YPGRASA+P+LD IT+L + G GY++LL+ERK + Sbjct: 23350 FYPGRASATPTLDFFITMLQMVGQFDLCFVVVLGE*CYSTVMCCQGKHGYKRLLEERKHL 23529 Query: 345 FVYLSTQLKKLAEAHNERLLQTPHN-------------------------PISLAMTLKT 379 Y++ QL+ LA ER+L +N IS AMTL T Sbjct: 23530 AAYMNQQLETLAADERERVLLVSNNEVALVDCCVGGWQLGGISISNALHAQISFAMTLGT 23709 Query: 380 IDG------HHDKAVTQLGSMLFTRQVSGAR 404 + +T LG+MLF+R VSGAR Sbjct: 23710 FCSDVTDLQEKSRQLTLLGAMLFSRGVSGAR 23802 Score = 47.0 bits (110), Expect(3) = e-111 Identities = 19/59 (32%), Positives = 37/59 (62%) Frame = +2 Query: 412 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASV 470 + ++G+ F F +H D +P AY+ A A+GM+ +VDL + +L K ++ R ++ +A + Sbjct: 23894 KAIAGYEFNAFGAHHDGFPVAYVTFACALGMQRGEVDLLVTKLRKTIHEWRTKRVKAEI 24070 >gb|AAQY01002018.1| Phytophthora sojae strain P6497 Psojae_Cont2018, whole genome shotgun sequence Length = 12660 Score = 32.3 bits (72), Expect = 2.0 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 298 FNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLL 338 ++EP I + PGR SP+ L+ +L GC G+ + L Sbjct: 3463 YSEPIRSGIVRYTPGRVRRSPASPQLVRVLGFGCLGFHREL 3585 >gb|AAQY01000325.1| Phytophthora sojae strain P6497 Psojae_Cont325, whole genome shotgun sequence Length = 189959 Score = 31.2 bits (69), Expect = 4.5 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 14/110 (12%) Frame = +3 Query: 289 PVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVL------------ITLLSLGCSGYRK 336 P+ GA I G PF+ P RA ASP+ +L ++S G Sbjct: 61977 PIRGARICGLRGPFLATFGIESPPRAPASPTRRILQYNQ*KIKFRPSFHVMSQWGGGGT* 62156 Query: 337 LLKERKEMFVYL--STQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH 384 LK R + + L +++ + + N ++ TP P S++ + + GH+ Sbjct: 62157 RLKRRLLLLLGLVRASRSCPFSCSANSKMTLTPLTPYSVSYRISIVTGHN 62306 >gb|AAQY01000497.1| Phytophthora sojae strain P6497 Psojae_Cont497, whole genome shotgun sequence Length = 20628 Score = 30.8 bits (68), Expect = 5.9 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -3 Query: 298 FNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK 353 ++EP I + PGR+ SP+ L+ + GC G+ +E+FV + LK Sbjct: 3730 YSEPIRSGIVRYTPGRSRRSPASPQLVRVPGFGCLGF------HRELFVCILFGLK 3581 >gb|AAQY01000221.1| Phytophthora sojae strain P6497 Psojae_Cont221, whole genome shotgun sequence Length = 399879 Score = 30.8 bits (68), Expect = 5.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 218 LCLHSTTACFAPRVPDRLEELAVICAN 244 LC S+T CFAP +P L IC N Sbjct: 58570 LCPSSSTFCFAPSLPSSLSRALCICIN 58490 >gb|AAQY01000349.1| Phytophthora sojae strain P6497 Psojae_Cont349, whole genome shotgun sequence Length = 153154 Score = 30.4 bits (67), Expect = 7.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 87 RHYRFIHGIGRSGDISAVQPKAAGSSLLNK 116 R YRFI G+ GDI+ + P AG S L + Sbjct: 108246 RRYRFITGVDWRGDIARINPVWAGLSALRR 108335 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 78,051,097 Number of sequences in database: 5578 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,847,243 Number of Sequences: 5578 Number of extensions: 724073 Number of successful extensions: 4004 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 511 Number of HSP's successfully gapped in prelim test: 182 Number of HSP's that attempted gapping in prelim test: 2956 Number of HSP's gapped (non-prelim): 2021 length of query: 504 length of database: 26,017,032 effective HSP length: 111 effective length of query: 393 effective length of database: 25,397,874 effective search space: 9981364482 effective search space used: 9981364482 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)