TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_38 97 8e-44 scaffold_20 32 1.5 scaffold_43 30 4.3 scaffold_21 30 4.3 scaffold_13 30 7.3 scaffold_19 29 9.5 >scaffold_38 Length = 375890 Score = 96.7 bits (239), Expect(4) = 8e-44 Identities = 60/172 (34%), Positives = 79/172 (45%), Gaps = 68/172 (39%) Frame = -2 Query: 238 LAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA--------------------------- 270 + +C + +PHVVNNAYGLQS+KC+HLI+ G Sbjct: 202597 VGAVCKDLQVPHVVNNAYGLQSTKCIHLIETGG*FVPLWE*TLRTRNASTHARPFAPPDT 202418 Query: 271 --RVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP----------------- 311 R GR+D VQS DKN MVPVGG+I+A I +S+ YP Sbjct: 202417 AQRAGRVDFVVQSTDKNLMVPVGGSIVASSTPALITALSQTYPGQSQRILRGLG*PATCP 202238 Query: 312 ----------------------GRASASPSLDVLITLLSLGCSGYRKLLKER 341 GRAS+ P +DV +TLLSLG +G++KLL+ER Sbjct: 202237 LWS*SVLIVLVDPCPLLLASISGRASSGPIVDVFLTLLSLGQTGFKKLLEER 202082 Score = 79.7 bits (195), Expect(2) = 6e-26 Identities = 36/66 (54%), Positives = 48/66 (72%), Gaps = 7/66 (10%) Frame = -3 Query: 34 LLLEQGKC-------PEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVAR 86 LL + G C PE GW + T+EL +HELA+MDSNNF G+ G+GEREGR+A+ +VAR Sbjct: 203718 LLSDAGGCLLL*HQWPEQGWSDETIELLMHELAIMDSNNFPGSTGLGEREGRIAAGIVAR 203539 Query: 87 RHYRFI 92 RH+R + Sbjct: 203538 RHFRCV 203521 Score = 61.2 bits (147), Expect(4) = 8e-44 Identities = 28/59 (47%), Positives = 39/59 (66%) Frame = -3 Query: 178 SMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLE 236 S G+ P++IE GD+L TD+ A+ I+E GP+ ILC+ +TT+CFAPR PD E Sbjct: 202878 SSACPGYTPIIIELRRSGDQLATDVTAIRQAIEEHGPDAILCVVTTTSCFAPRSPDE*E 202702 Score = 57.4 bits (137), Expect(2) = 6e-26 Identities = 25/42 (59%), Positives = 34/42 (80%) Frame = -2 Query: 89 YRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAG 130 YR HGIGRSGDI+A+QPKAAGSSLL ++T + L ++++ G Sbjct: 203443 YRLGHGIGRSGDIAAIQPKAAGSSLLARLTEKMTLQLLRVVG 203318 Score = 42.4 bits (98), Expect(4) = 8e-44 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = -1 Query: 97 RSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 156 R+ D A P+ + +L + + S V G+ S C ++P+ATGM+L LTLR Sbjct: 203279 RAPDALA*WPRESARALSSSLHMSCV-------GLRSTKQCILLPVATGMALVFAMLTLR 203121 Query: 157 HKRPKAKYIIWP 168 +RP A+ + P Sbjct: 203120 PRRPSARCVTSP 203085 Score = 37.4 bits (85), Expect(4) = 8e-44 Identities = 13/21 (61%), Positives = 19/21 (90%) Frame = -2 Query: 164 YIIWPRIDQKSCFKSMVTAGF 184 Y++W RIDQK+C K++VTAG+ Sbjct: 202999 YVVWSRIDQKTCLKAIVTAGW 202937 Score = 35.4 bits (80), Expect = 0.13 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -3 Query: 394 MLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIG 441 ++F R VSG + V+G F G+ +H D+YP Y+ AAAIG Sbjct: 201588 LVFDRVVSGHAE------KKVAGLQFTGYGAHVDDYPSPYVTVAAAIG 201463 >scaffold_20 Length = 720398 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = -2 Query: 18 VRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELA---VMDSNNFLGNCGVGE 74 VR C +H H++ QGKC GW S L+ LA ++++ +F+ C Sbjct: 473527 VRMRCPVLTSHRHVVLSKDSQGKCWGRGWRASALKS*ASALAQPGLVETKHFVVKCSA** 473348 Query: 75 REGR 78 R+ R Sbjct: 473347 RQAR 473336 >scaffold_43 Length = 284626 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/78 (28%), Positives = 31/78 (39%) Frame = -2 Query: 36 LEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI 95 L QG E GW EST L V D +G+ L R H +F+ + Sbjct: 31194 LNQGMWCEVGWTESTHHL------VEDGGTIVGD-----------GNLAIRAHEKFVQAL 31066 Query: 96 GRSGDISAVQPKAAGSSL 113 G G V +A+G ++ Sbjct: 31065 GTQGSAERVGHRASGQNV 31012 >scaffold_21 Length = 711696 Score = 30.4 bits (67), Expect = 4.3 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 15 PAYVRQGCEARRAHEHLIRLLLEQGKCP 42 PA R GC+ +HEH +R L+EQ + P Sbjct: 8854 PAECRCGCQGTCSHEHHLRCLVEQHEFP 8771 >scaffold_13 Length = 1102880 Score = 29.6 bits (65), Expect = 7.3 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 67 LGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 113 LG G G R G ALV +R I+ +G G+ +PK G S+ Sbjct: 352844 LGGAGAGARSGASGVALVVVPVFRGIYLLG*PGNRGRKRPKKCGRSI 352984 >scaffold_19 Length = 781963 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +3 Query: 5 SFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGW 46 SFAA R +P +RQ C R HL + CPE W Sbjct: 413718 SFAARHRSNAP*QLRQSCR*RSNPNHLEQRCQYCSHCPEHEW 413843 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,830,496 Number of Sequences: 218 Number of extensions: 427443 Number of successful extensions: 2245 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 2007 Number of HSP's gapped (non-prelim): 703 length of query: 504 length of database: 13,877,786 effective HSP length: 106 effective length of query: 398 effective length of database: 13,854,678 effective search space: 5514161844 effective search space used: 5514161844 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)