TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium transferase [Mus musculus] (504 letters) Database: genome.fa 1696 sequences; 31,706,682 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value mex400p23.q1k 286 2e-77 mex371a23.q1k 33 0.65 mex120o20.q1k 31 1.9 mex569c10.q1k 30 4.2 1036_mexFOS1_31j04.p1kpIBF 30 4.2 mex309d04.q1k 30 5.5 >mex400p23.q1k Length = 34044 Score = 286 bits (733), Expect = 2e-77 Identities = 200/587 (34%), Positives = 279/587 (47%), Gaps = 133/587 (22%) Frame = +2 Query: 1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAV 60 M+ + E VS Y+ G E+ ++ ++R +L Q CP+DG ++ +EL L +L++ Sbjct: 5945 MDDRALKLAEAFVSARYIDAGRESLQSTARILRSILAQRCCPDDGLTDAAIELILRQLSL 6124 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRV S+LV RH+ HGIGRSGD+ + QPKAAGSSLL KITN Sbjct: 6125 MDTNNFAHHVGGGEREGRVISSLVRMRHFGLTHGIGRSGDVLSEQPKAAGSSLLYKITNV 6304 Query: 121 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTL------------------------- 155 L+L++I+ AG S A+ VVPMATGM+L L + Sbjct: 6305 LMLDLIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKAHMKELMEEAEAVQLQRTVTTDS 6484 Query: 156 --------------------RHKRPKA------KYIIWPRIDQKSCFKSMVTAGFEPVVI 189 RH R +Y+IWPRIDQK+ K + AG PV + Sbjct: 6485 RSATSAAQVQEPPMNEADRARHDRTSLPVPATPRYVIWPRIDQKTALKCIDAAGLVPVPV 6664 Query: 190 E-------------------NVLEGDE----------------LRTDLKAVEAKIQELG- 213 + N L+ D+ L + V A + +G Sbjct: 6665 QLRPAVPLARSAAPCVSTNRNNLDRDQDSIASPSTRTSSSSLFLECHVDDVAAAVSAVGG 6844 Query: 214 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 273 P ++C+ STT+CFAPR+PD LA C IP+VVNNAYG+QS + M + R+G Sbjct: 6845 PSQVVCVLSTTSCFAPRLPDNTVALAQYCKKAGIPYVVNNAYGVQSRRIMTRLDAAQRLG 7024 Query: 274 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG 333 R+D VQS DKNF+VPVGG+II ++ + ++ +Y GRAS SP +D+ IT LSLG G Sbjct: 7025 RVDFVVQSGDKNFLVPVGGSIICSSDKERCKAVAALYAGRASMSPIVDLFITALSLGRRG 7204 Query: 334 YRKLLKERKEMFVYLSTQLKKLAEAHNERLL-----------------------QTPHNP 370 + L ++R + L QL+ A E LL P N Sbjct: 7205 MQALWRDRYKCRARLIRQLRVFARERREVLLVDDSDDDKDNEDTVGGSQNTSNAAVPRND 7384 Query: 371 ISLAMTLKT--------------IDGHHDKAVTQ------LGSMLFTRQVSGARAV--PL 408 IS+A+T++ + + VT G+ LF V+G R + Sbjct: 7385 ISVAVTMRAYGLPAAEASSSGAQLGSEQAEKVTNWAAARAFGAQLFRSAVTGPRVITPAP 7564 Query: 409 GNVQTVSGHTFRGFMSHADNY-PCAYLNAAAAIGMKMQDVDLFIKRL 454 T++G FR + H D PC L A IGM +VD I RL Sbjct: 7565 STPTTIAGCKFRNYGMHQDREPPCPLLVIACGIGMSEAEVDALIARL 7705 >mex371a23.q1k Length = 143723 Score = 32.7 bits (73), Expect = 0.65 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +1 Query: 199 RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP 232 R LK + L P H+L L +TAC PRVP Sbjct: 134962 RDHLKKKRVTVTRLFPSHVLSLCLSTACMCPRVP 135063 >mex120o20.q1k Length = 41957 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -2 Query: 185 EPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEE 237 E +++N +E R DLKA A+++ + P++++ L + P RLE+ Sbjct: 14035 ERALVQNAAACEEARDDLKAQ*ARVEHISPDNVVRLVHASRRGGVTAPRRLED 13877 >mex569c10.q1k Length = 3385 Score = 30.0 bits (66), Expect = 4.2 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Frame = -3 Query: 211 ELGPEHILCLHSTT------ACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMH 264 ELGP H + +HS T PR P+ + D+ V ++ G ++ Sbjct: 3005 ELGPHHHMGVHSCTILPQRHTSTCPRAPN----------SSDLSRVAESSAGGIRTRAHE 2856 Query: 265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGF 298 A R D V S D + +P+ A++A F Sbjct: 2855 CAHSQALRSRSDHVVYSRDHCYALPLCAALVASF 2754 >1036_mexFOS1_31j04.p1kpIBF Length = 182378 Score = 30.0 bits (66), Expect = 4.2 Identities = 38/175 (21%), Positives = 63/175 (36%) Frame = -2 Query: 305 DISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL 364 DI + P SA + + I+LL + GY+ LKE E+ + + A A + Sbjct: 144826 DIPLLVPIVVSAGLLVILFISLLLMYLCGYKPALKEEAELCAKIEDVQARTARAEEKLAA 144647 Query: 365 QTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMS 424 + N S++ +T G +V + T+S T R S Sbjct: 144646 KRRRNQRSVSSLARTPQG----------------------SVVASSTVTLSPVTQRCASS 144533 Query: 425 HADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASVVSGADRNKA 479 H+ + A L+ +A + Q I + QTR S ++ R A Sbjct: 144532 HSISPKSAQLHVLSAEPHQQQQQHACAAAALSSQGIQSQPQTRGSFIAARSRTDA 144368 >mex309d04.q1k Length = 34001 Score = 29.6 bits (65), Expect = 5.5 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Frame = +1 Query: 82 ALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVP 141 A + RH+ HG G S++ + GSS +T+SL HSVA V Sbjct: 12694 AAMGARHHNHQHGAG-----SSLSERREGSSFCTAVTSSLKSETHW*RSAHSVADTAVAR 12858 Query: 142 MATGM--SLTLCF---LTLRHKRPKAK 163 M SL F L R RPK K Sbjct: 12859 MRWSKI*SLRASFSGALPQRSPRPKLK 12939 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,706,682 Number of sequences in database: 1696 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,955,175 Number of Sequences: 1696 Number of extensions: 343771 Number of successful extensions: 2014 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 193 Number of HSP's successfully gapped in prelim test: 80 Number of HSP's that attempted gapping in prelim test: 1657 Number of HSP's gapped (non-prelim): 748 length of query: 504 length of database: 10,568,894 effective HSP length: 104 effective length of query: 400 effective length of database: 10,392,510 effective search space: 4157004000 effective search space used: 4157004000 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)