TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27369676|ref|NP_766078.1| O-phosphoseryl-tRNA(Sec) selenium
transferase [Mus musculus]
         (504 letters)

Database: genome.fa 
           2172 sequences; 20,771,095 total letters

Searching..................................................done

 ***** No hits found ******

  Database: genome.fa
    Posted date:  Jan 19, 2010  5:04 PM
  Number of letters in database: 20,771,095
  Number of sequences in database:  2172
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,738,190
Number of Sequences: 2172
Number of extensions: 130524
Number of successful extensions: 384
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 128
length of query: 504
length of database: 6,923,698
effective HSP length: 101
effective length of query: 403
effective length of database: 6,704,326
effective search space: 2701843378
effective search space used: 2701843378
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)