TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct...    29   2.5  
gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    28   5.6  

>gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun
              sequence
          Length = 1317241

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 35     SLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFLDN 70
              S L E  L  D W +   ESFL +    DS NF D+
Sbjct: 351289 SFLEEDDLDSDAWGNDQDESFLQDDDSDDSENFDDS 351396



 Score = 27.7 bits (60), Expect = 5.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = -2

Query: 339    QRCLEDRGDVYGYMRTKLGECVGE---FGERLLDTPGN----PISIGVSLETHAKLSE-D 390
              +R +E+R D +GY    + EC+        R  +T GN    P   G  L     LSE D
Sbjct: 343989 RRKIEERTDPWGYSLNSVAECMKRSIPLQLRATETVGNLNLVPYYAGHVLGASMFLSECD 343810

Query: 391    GKDVSFFGSMLF---SRCVS 407
              G  V + G+ L+   S C++
Sbjct: 343809 GFKVLYTGNSLYYSISNCIN 343750


>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
               shotgun sequence
          Length = 1971884

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 221     CVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATAL 264
               C  T T    P     CS ++  CA+LD+   V   Y   A ++
Sbjct: 1850401 CSKTYTDVVMPVTHTVCSFLSDQCADLDLDEAVEKLYSAGALSV 1850532



 Score = 27.7 bits (60), Expect = 5.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 221     CVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATAL 264
               C  T T    P     CS ++  CA+LD+   V   Y   A ++
Sbjct: 1855745 CSKTYTDVVMPVTHTVCSFLSDQCADLDLDEAVEKLYSAGALSV 1855876


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,442,037
Number of Sequences: 9
Number of extensions: 41349
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 29
length of query: 498
length of database: 2,782,535
effective HSP length: 95
effective length of query: 403
effective length of database: 2,781,680
effective search space: 1121017040
effective search space used: 1121017040
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)