TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: genome.fa 
           697 sequences; 71,881,135 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_7                                                            294   3e-79

>scaffold_7
          Length = 741107

 Score =  294 bits (752), Expect = 3e-79
 Identities = 167/414 (40%), Positives = 257/414 (62%), Gaps = 4/414 (0%)
 Frame = -3

Query: 9      LAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSNNFL 68
              L   ++   Y+   S +   + KL   LLS R+LP++G+DD +IE  L+  A MD+NNF 
Sbjct: 284124 LCSEIIDDKYVKIASNSLNAKEKLFKLLLS*RQLPEEGFDDLTIEYLLNIFATMDTNNFS 283945

Query: 69     DNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128
              + VGVGERE+R++S LV +R++ + HGIGRSGD+ A QPKAAGSSL+ KLT  L  DA++
Sbjct: 283944 NKVGVGERESRIFSALV*KRNYYMGHGIGRSGDLIASQPKAAGSSLIAKLTKHLAKDALK 283765

Query: 129    IAGLEDMGPALVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLEL 188
              ++  + +   L++P+ATGM ++L LLA+KS +P  A  V+W R+D KTC+K + +A L  
Sbjct: 283764 LSNYQ-INELLLVPVATGMAISLCLLALKSLKP-*AKYVLWPRID*KTCLKCI*TANLIP 283591

Query: 189    VVVSPKLVGDQLCTDLDXXXXXXXXXXXXXXCCVVTSTSCFAPRAGDACSDVAKMCAELD 248
              +V+   +    + T+LD               CV+++TSCFAPR  D   ++AK+C    
Sbjct: 283590 IVIDSVIQDHVVTTNLDMLI*KVNEIGPDNIVCVLSTTSCFAPRIPDNIGEIAKICK*FS 283411

Query: 249    VGHVVNNAYGVQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVD 308
              + HVVNNAYG+    +   +      G V+ +V STDKNFMVPVGGA++     + +++ 
Sbjct: 283410 IYHVVNNAYGL*CNKIANSINLGLA*GTVNLIVSSTDKNFMVPVGGALIYG--NDKKLIK 283237

Query: 309    AVRKSYPGRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRTKLGECVGEFGERLL 368
               + + YPGRAS +P+LDL IT LSMG  G+ +  ++R + Y Y + KL     +  E++L
Sbjct: 283236 *ISELYPGRASAAPILDLFITFLSMGKSGYLQLQKERVENYAYFKEKL*IMT*KISEQIL 283057

Query: 369    DTPGNPISIGVSLETHAKLS----EDGKDVSFFGSMLFSRCVSGTRVVAPGKRQ 418
              +TP N ISIG+SL  + K+     E+   ++  G++L+S+ V G+RV+   K +
Sbjct: 283056 NTPKNSISIGISL-*NLKID*NN*EEKN*ITKLGAILYSKKVMGSRVITNKKNK 282898


  Database: genome.fa
    Posted date:  Feb 10, 2010 10:01 AM
  Number of letters in database: 71,881,135
  Number of sequences in database:  697
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,515,783
Number of Sequences: 697
Number of extensions: 264595
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 35
length of query: 498
length of database: 23,960,378
effective HSP length: 110
effective length of query: 388
effective length of database: 23,883,708
effective search space: 9266878704
effective search space used: 9266878704
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)