TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium transferase [Micromonas sp. RCC299] (498 letters) Database: genome.fa 5578 sequences; 78,051,097 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53... 243 1e-96 gb|AAQY01001460.1| Phytophthora sojae strain P6497 Psojae_Cont14... 44 7e-04 gb|AAQY01001459.1| Phytophthora sojae strain P6497 Psojae_Cont14... 44 7e-04 gb|AAQY01001764.1| Phytophthora sojae strain P6497 Psojae_Cont17... 41 0.004 gb|AAQY01000141.1| Phytophthora sojae strain P6497 Psojae_Cont14... 32 2.6 gb|AAQY01001395.1| Phytophthora sojae strain P6497 Psojae_Cont13... 31 5.8 gb|AAQY01001397.1| Phytophthora sojae strain P6497 Psojae_Cont13... 30 7.6 gb|AAQY01001046.1| Phytophthora sojae strain P6497 Psojae_Cont10... 30 7.6 gb|AAQY01000549.1| Phytophthora sojae strain P6497 Psojae_Cont54... 30 7.6 >gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53, whole genome shotgun sequence Length = 75531 Score = 243 bits (621), Expect(2) = 1e-96 Identities = 132/257 (51%), Positives = 173/257 (67%), Gaps = 7/257 (2%) Frame = +3 Query: 1 MFSPEAYALAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAA 60 + + + ALA+ LV Y+ QG A R KLVTSLL++RRLP +GWDD S+E L + Sbjct: 22326 LMNARSAALAQHLVPSTYVQQGLDAVRSREKLVTSLLAQRRLPDEGWDDASVELLLQTLS 22505 Query: 61 MMDSNNFLDNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTN 120 MDSNNF + G GEREARV+SPLVARRH+ LAHG+GRSGDVAA QPKAAGSSLL +L N Sbjct: 22506 AMDSNNFRGSAGAGEREARVFSPLVARRHFYLAHGVGRSGDVAAVQPKAAGSSLLVQLAN 22685 Query: 121 LLVADAMRIAGLEDMGPALVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKA 180 L D +R+AG+ + ALVLP+ATGM+LTLVLL +K +P A V+W R+DQK+C K+ Sbjct: 22686 ALAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLKESKPH-ARYVIWPRIDQKSCFKS 22862 Query: 181 VLSAGLELVVVSPKLV-------GDQLCTDLDXXXXXXXXXXXXXXCCVVTSTSCFAPRA 233 +++AGL +V++ LV G L TDL V+++TSCFAPRA Sbjct: 22863 IVAAGLTPLVLANVLVEQEDGKPGGFLKTDLVGMTALMDQYGSDSVLAVMSTTSCFAPRA 23042 Query: 234 GDACSDVAKMCAELDVG 250 D+ ++AK+C E +VG Sbjct: 23043 YDSVEEIAKLCEERNVG 23093 Score = 130 bits (327), Expect(2) = 1e-96 Identities = 84/213 (39%), Positives = 108/213 (50%), Gaps = 53/213 (24%) Frame = +1 Query: 251 HVVNNAYGVQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAV 310 HV+NNAYGVQA+ V +A R GRVDAVVQS DKNFMVPVGGA+VCS + E+VD V Sbjct: 23170 HVINNAYGVQASKCVHHVERAMRTGRVDAVVQSLDKNFMVPVGGAIVCS--ASREVVDRV 23343 Query: 311 RKSYPGRASISPVLDLLITLLSM------------------------GSHGWQRCLEDRG 346 K YPGRAS +P LD IT+L M G HG++R LE+R Sbjct: 23344 AKFYPGRASATPTLDFFITMLQMVGQFDLCFVVVLGE*CYSTVMCCQGKHGYKRLLEERK 23523 Query: 347 DVYGYMRTKLGECVGEFGERLLDTPGNPIS-------------IGVSLETHAKLS----- 388 + YM +L + ER+L N ++ I +S HA++S Sbjct: 23524 HLAAYMNQQLETLAADERERVLLVSNNEVALVDCCVGGWQLGGISISNALHAQISFAMTL 23703 Query: 389 -----------EDGKDVSFFGSMLFSRCVSGTR 410 E + ++ G+MLFSR VSG R Sbjct: 23704 GTFCSDVTDLQEKSRQLTLLGAMLFSRGVSGAR 23802 Score = 36.2 bits (82), Expect = 0.14 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = +2 Query: 430 ASHDAYPVPYFTAAAALGTTREDVDRFCAQLRK 462 A HD +PV Y T A ALG R +VD +LRK Sbjct: 23930 AHHDGFPVAYVTFACALGMQRGEVDLLVTKLRK 24028 >gb|AAQY01001460.1| Phytophthora sojae strain P6497 Psojae_Cont1460, whole genome shotgun sequence Length = 108242 Score = 43.9 bits (102), Expect = 7e-04 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = -2 Query: 71 VGVGEREARVYSPLVARR--HWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128 V ER A + V R H +AHG+G + D AA +P+A G S+ T + A A Sbjct: 511 VETAERHAETAAAAVETRAEHVPVAHGVGPARDAAAHEPEAVG-SVATPATPVAPAAAET 335 Query: 129 IAGLEDMGPALVLPLATGMTLTLVL 153 A + PA VL L G+T+ LV+ Sbjct: 334 PASAKTQTPAAVLLLLVGVTIVLVV 260 >gb|AAQY01001459.1| Phytophthora sojae strain P6497 Psojae_Cont1459, whole genome shotgun sequence Length = 1574 Score = 43.9 bits (102), Expect = 7e-04 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = -3 Query: 71 VGVGEREARVYSPLVARR--HWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMR 128 V ER A + V R H +AHG+G + D AA +P+A G S+ T + A A Sbjct: 939 VETAERHAETAAAAVETRAEHVPVAHGVGPARDAAAHEPEAVG-SVATPATPVAPAAAET 763 Query: 129 IAGLEDMGPALVLPLATGMTLTLVL 153 A + PA VL L G+T+ LV+ Sbjct: 762 PASAKTQTPAAVLLLLVGVTIVLVV 688 >gb|AAQY01001764.1| Phytophthora sojae strain P6497 Psojae_Cont1764, whole genome shotgun sequence Length = 35232 Score = 41.2 bits (95), Expect = 0.004 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -1 Query: 75 EREARVYSPLVARR--HWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGL 132 ER A + V R H +AHG+G + D AA +P+A G S+ T + A A A Sbjct: 7686 ERHAETAAAAVETRAEHVPVAHGVGPARDAAAHEPEAVG-SVATPATPVAPAAAETPASA 7510 Query: 133 EDMGPALVLPLATGMTLTL 151 + PA VL L G+T+ L Sbjct: 7509 KTQTPAAVLLLLVGVTIVL 7453 >gb|AAQY01000141.1| Phytophthora sojae strain P6497 Psojae_Cont141, whole genome shotgun sequence Length = 128292 Score = 32.0 bits (71), Expect = 2.6 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +1 Query: 268 VTKAW--RRGRVDAVVQSTDKNFMVPVGGAVV-CSGKGNT 304 V AW + AVV + +K FMV GG VV CSG G T Sbjct: 103522 VASAWFVEQSMARAVVATNEKTFMVGFGGGVVWCSGGGET 103641 >gb|AAQY01001395.1| Phytophthora sojae strain P6497 Psojae_Cont1395, whole genome shotgun sequence Length = 130636 Score = 30.8 bits (68), Expect = 5.8 Identities = 13/53 (24%), Positives = 24/53 (45%) Frame = -2 Query: 220 CCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAW 272 C + + +SC A R+ +CS ++ C+ + A C+ + KAW Sbjct: 58551 CSLASFSSCSATRSASSCS*TSRSCSSSAFFSSFRSVNAS*VAAFCRAICKAW 58393 >gb|AAQY01001397.1| Phytophthora sojae strain P6497 Psojae_Cont1397, whole genome shotgun sequence Length = 174575 Score = 30.4 bits (67), Expect = 7.6 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +1 Query: 42 LPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARV 80 LPKDG DH ++SF+ ++++ L V +G+ +++ Sbjct: 56413 LPKDGGADHGVQSFIVPLRDVETHEPLPGVSIGDMGSKM 56529 >gb|AAQY01001046.1| Phytophthora sojae strain P6497 Psojae_Cont1046, whole genome shotgun sequence Length = 231558 Score = 30.4 bits (67), Expect = 7.6 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = -2 Query: 220 CCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRG 275 C V + +C AP AG A +C G +NA G AT+ CK T A RRG Sbjct: 37832 CSGVATAACVAPSAGSA-----GVCPASTTG-TASNAVG--ATSSCKSSTLAVRRG 37689 >gb|AAQY01000549.1| Phytophthora sojae strain P6497 Psojae_Cont549, whole genome shotgun sequence Length = 157963 Score = 30.4 bits (67), Expect = 7.6 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = -1 Query: 296 VVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCLEDRGDVYGYMRT- 354 V C G T ++ R ++ G A +L +L L ++ R L+ G++ + Sbjct: 137983 VNCFGSLKTLVL---RNNFIGEAGCQALLRMLQCLPAL------RVLDVSGNILTDLDAL 137831 Query: 355 KLGECVGEFGERLLDTPGNPISIGVSLETHA 385 L + + E+LL PGNPI++G E+ A Sbjct: 137830 ALADWISSRAEQLLKAPGNPIALGCEAESPA 137738 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 78,051,097 Number of sequences in database: 5578 Lambda K H 0.319 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,703,754 Number of Sequences: 5578 Number of extensions: 719331 Number of successful extensions: 3440 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 384 Number of HSP's successfully gapped in prelim test: 132 Number of HSP's that attempted gapping in prelim test: 2625 Number of HSP's gapped (non-prelim): 1583 length of query: 498 length of database: 26,017,032 effective HSP length: 111 effective length of query: 387 effective length of database: 25,397,874 effective search space: 9828977238 effective search space used: 9828977238 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)