TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium transferase [Micromonas sp. RCC299] (498 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_38 76 5e-20 scaffold_27 34 0.29 scaffold_3 34 0.29 scaffold_21 30 4.2 scaffold_11 30 5.5 scaffold_6 30 5.5 >scaffold_38 Length = 375890 Score = 75.9 bits (185), Expect(2) = 5e-20 Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 71/186 (38%) Frame = -2 Query: 231 PRAGDACSDV---AKMCAELDVGHVVNNAYGVQATALCKEVTK----------------- 270 P G +C+ V +C +L V HVVNNAYG+Q+T + Sbjct: 202633 P*NGASCASVPGVGAVCKDLQVPHVVNNAYGLQSTKCIHLIETGG*FVPLWE*TLRTRNA 202454 Query: 271 ------------AWRRGRVDAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYP--- 315 A R GRVD VVQSTDKN MVPVGG++V S ++ A+ ++YP Sbjct: 202453 STHARPFAPPDTAQRAGRVDFVVQSTDKNLMVPVGGSIVAS--STPALITALSQTYPGQS 202280 Query: 316 ------------------------------------GRASISPVLDLLITLLSMGSHGWQ 339 GRAS P++D+ +TLLS+G G++ Sbjct: 202279 QRILRGLG*PATCPLWS*SVLIVLVDPCPLLLASISGRASSGPIVDVFLTLLSLGQTGFK 202100 Query: 340 RCLEDR 345 + LE+R Sbjct: 202099 KLLEER 202082 Score = 59.3 bits (142), Expect(2) = 5e-19 Identities = 27/55 (49%), Positives = 38/55 (69%) Frame = -3 Query: 36 LLSERRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRHW 90 LL + P+ GW D +IE + E A+MDSNNF + G+GERE R+ + +VARRH+ Sbjct: 203694 LLL*HQWPEQGWSDETIELLMHELAIMDSNNFPGSTGLGEREGRIAAGIVARRHF 203530 Score = 54.3 bits (129), Expect(2) = 5e-19 Identities = 25/42 (59%), Positives = 31/42 (73%) Frame = -2 Query: 90 WNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAG 131 + L HGIGRSGD+AA QPKAAGSSLL +LT + +R+ G Sbjct: 203443 YRLGHGIGRSGDIAAIQPKAAGSSLLARLTEKMTLQLLRVVG 203318 Score = 41.2 bits (95), Expect(2) = 5e-20 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Frame = -3 Query: 129 IAGLEDMGPALVLPLATGMTLTLVLLAVK-SKRP---------KTATKVVWCRLDQKTCV 178 + L GP+ + + ++ LA K S RP + ++ W C Sbjct: 203043 LVNLNSCGPSYISSATSSGPASIKRLASKPSSRPVGCSSFPNGQVKQRLTWFSSPSSAC- 202867 Query: 179 KAVLSAGLELVVVSPKLVGDQLCTDLDXXXXXXXXXXXXXXCCVVTSTSCFAPRAGD 235 G +++ + GDQL TD+ CVVT+TSCFAPR+ D Sbjct: 202866 -----PGYTPIIIELRRSGDQLATDVTAIRQAIEEHGPDAILCVVTTTSCFAPRSPD 202711 Score = 32.7 bits (73), Expect = 0.85 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = -1 Query: 98 RSGDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPALVLPLATGMTLTLVLLAVK 157 R+ D A P+ + +L + L M GL ++LP+ATGM L +L ++ Sbjct: 203279 RAPDALA*WPRESARALSSSLH-------MSCVGLRSTKQCILLPVATGMALVFAMLTLR 203121 Query: 158 SKRP 161 +RP Sbjct: 203120 PRRP 203109 >scaffold_27 Length = 606668 Score = 34.3 bits (77), Expect = 0.29 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 17/115 (14%) Frame = -2 Query: 245 AELDVGHVVNNA------YGVQA-TALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVV 297 A LD+GHV++N G Q +A+ + A +RG V + K + +GG +V Sbjct: 204505 AILDIGHVIHNVDACTLVVGAQEPSAVGMDGLYALKRGEEGHVKGAIAKQNGLVIGGKLV 204326 Query: 298 CSGKGNTE----------IVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQRCL 342 GKG E +++ VR GR+ + LL+ SH Q CL Sbjct: 204325 AGGKGVEELASQFGLILGLLEIVRLGDEGRSFTLGLGQAFCHLLTS*SHACQLCL 204161 >scaffold_3 Length = 2609234 Score = 34.3 bits (77), Expect = 0.29 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = -2 Query: 239 DVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRGRVDAVVQSTDKNFMVPVGGAVVC 298 D A +CA AYG + +ALC W RG V ++ S F V G+ VC Sbjct: 973066 DAAAVCAPPSA------AYGTRISALCVAEPTRWTRGCVGGII*SIANRFAVCSHGSRVC 972905 Query: 299 SGKGNTEIVDAVRKS 313 + + + ++ R + Sbjct: 972904 ADEQSCQVKQLQRST 972860 >scaffold_21 Length = 711696 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 73 VGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKA 109 +G R AR S LV RR W LA +GR +P+A Sbjct: 5125 LGARAARNLSKLVRRREWLLAPRLGRDRKRCTGEPRA 5015 >scaffold_11 Length = 1136692 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 157 KSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLVG 197 K+KRPK+ TK WC L + C + ++SP+ G Sbjct: 224588 KAKRPKSFTKWQWCVLVDQCCAARFSPRSHHVSLLSPRSFG 224466 >scaffold_6 Length = 1473069 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +1 Query: 164 ATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLVGDQLC 201 A KV+W +D T V+AVL A E L GD C Sbjct: 163372 ARKVIWIWIDDTTLVRAVLQARAEKKTNPRPLDGDTTC 163485 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.319 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,809,622 Number of Sequences: 218 Number of extensions: 424883 Number of successful extensions: 1994 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1758 Number of HSP's gapped (non-prelim): 754 length of query: 498 length of database: 13,877,786 effective HSP length: 106 effective length of query: 392 effective length of database: 13,854,678 effective search space: 5431033776 effective search space used: 5431033776 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)