TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium transferase [Micromonas sp. RCC299] (498 letters) Database: genome.fa 1696 sequences; 31,706,682 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value mex400p23.q1k 256 2e-68 1036_mexFOS1_21p03.p1kpIBF 31 1.9 mex287b04.p1k 31 2.4 mex304e01.p1k 30 5.4 mex248e01.q1k 29 7.1 mex180i09.q1k 29 9.2 >mex400p23.q1k Length = 34044 Score = 256 bits (655), Expect = 2e-68 Identities = 196/586 (33%), Positives = 262/586 (44%), Gaps = 130/586 (22%) Frame = +2 Query: 6 AYALAEGLVSKAYINQGSQATARRSKLVTSLLSERRLPKDGWDDHSIESFLSEAAMMDSN 65 A LAE VS YI+ G ++ ++++ S+L++R P DG D +IE L + ++MD+N Sbjct: 5957 ALKLAEAFVSARYIDAGRESLQSTARILRSILAQRCCPDDGLTDAAIELILRQLSLMDTN 6136 Query: 66 NFLDNVGVGEREARVYSPLVARRHWNLAHGIGRSGDVAAEQPKAAGSSLLNKLTNLLVAD 125 NF +VG GERE RV S LV RH+ L HGIGRSGDV +EQPKAAGSSLL K+TN+L+ D Sbjct: 6137 NFAHHVGGGEREGRVISSLVRMRHFGLTHGIGRSGDVLSEQPKAAGSSLLYKITNVLMLD 6316 Query: 126 AMRIAGLEDMGPALVLPLATGMTLTLVLLAVKSKR------------------------- 160 +R AG A+V+P+ATGMTL LVL V Sbjct: 6317 LIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKAHMKELMEEAEAVQLQRTVTTDSRSAT 6496 Query: 161 -------------------------PKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPK- 194 P T V+W R+DQKT +K + +AGL V V + Sbjct: 6497 SAAQVQEPPMNEADRARHDRTSLPVPATPRYVIWPRIDQKTALKCIDAAGLVPVPVQLRP 6676 Query: 195 ------------------LVGDQ-----------------LCTDLDXXXXXXXXXXXXXX 219 L DQ C D Sbjct: 6677 AVPLARSAAPCVSTNRNNLDRDQDSIASPSTRTSSSSLFLECHVDDVAAAVSAVGGPSQV 6856 Query: 220 CCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRGRVDA 279 CV+++TSCFAPR D +A+ C + + +VVNNAYGVQ+ + + A R GRVD Sbjct: 6857 VCVLSTTSCFAPRLPDNTVALAQYCKKAGIPYVVNNAYGVQSRRIMTRLDAAQRLGRVDF 7036 Query: 280 VVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHGWQ 339 VVQS DKNF+VPVGG+++CS + E AV Y GRAS+SP++DL IT LS+G G Q Sbjct: 7037 VVQSGDKNFLVPVGGSIICS--SDKERCKAVAALYAGRASMSPIVDLFITALSLGRRGMQ 7210 Query: 340 RCLEDRGDVYGYMRTKLGECVGEFGERLL-----------DT------------PGNPIS 376 DR + +L E E LL DT P N IS Sbjct: 7211 ALWRDRYKCRARLIRQLRVFARERREVLLVDDSDDDKDNEDTVGGSQNTSNAAVPRNDIS 7390 Query: 377 IGVSLETH----AKLSEDGKDVS--------------FFGSMLFSRCVSGTRVVAPG-KR 417 + V++ + A+ S G + FG+ LF V+G RV+ P Sbjct: 7391 VAVTMRAYGLPAAEASSSGAQLGSEQAEKVTNWAAARAFGAQLFRSAVTGPRVITPAPST 7570 Query: 418 QXXXXXXXXXXXASHD--AYPVPYFTAAAALGTTREDVDRFCAQLR 461 H P P A +G + +VD A+LR Sbjct: 7571 PTTIAGCKFRNYGMHQDREPPCPLLVIACGIGMSEAEVDALIARLR 7708 >1036_mexFOS1_21p03.p1kpIBF Length = 50622 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = +2 Query: 221 CVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATA 263 CV+ + C R G+ S+V CA LDVG N A G Q TA Sbjct: 1316 CVIDAAVC*LHR-GEGASEV---CAPLDVGQQQNRAQGAQETA 1432 >mex287b04.p1k Length = 110370 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = -1 Query: 315 PGRASISPVLDLLITLLSMGS----HGWQRCLED 344 P AS+SP L + + + MG+ H W RCL D Sbjct: 43608 PSPASLSPSLSVCVVCVCMGTIPVYHAWPRCLAD 43507 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -3 Query: 75 EREARVYSPLVARRHWNLAHGIGR--SGDVAAEQPKAAGSSLLNK 117 +RE+R Y+P RRH AHG GR +G + E+ AAG N+ Sbjct: 102277 KRESRSYAPSHQRRH---AHGKGRGHTGGMTIERSMAAGKWKANE 102152 >mex304e01.p1k Length = 24180 Score = 29.6 bits (65), Expect = 5.4 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Frame = +3 Query: 105 EQPKAAGSSLLNKLTNL--LVADAMRIAGLEDMGPALVLPLATGMTLTLVLLAVKSKRPK 162 E P+ A + LL T+ L+ADA++ A L+LP + S++ + Sbjct: 3816 EPPQRAATELLLLHTDAQHLLADAVKAA-------RLILPTHVTTMTHVCCFQCCSQKSR 3974 Query: 163 TATKVVWCRLDQKTCVKAVLSAGLELVVVSP 193 T T+ ++ KT A ++ G+E VVV P Sbjct: 3975 TRTQGEELGVNHKTTTAAEVAGGIETVVVWP 4067 >mex248e01.q1k Length = 53680 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -1 Query: 50 HSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVAR 87 +SI S + A+ D ++ DN G GE Y PLVAR Sbjct: 9940 NSIASLRAVASDADDDDPRDNDGYGEGACSTYGPLVAR 9827 >mex180i09.q1k Length = 344920 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -2 Query: 139 LVLPLATGMTLTLVLLAVKSKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVS------ 192 +V+P+ G + LV+ + + P A ++W +L C+ + A + L+ ++ Sbjct: 182169 IVIPVIMGAPMVLVVAELAAAVPSNAGFLMWIKLSFHRCMYLSM-ATMSLIYIAVDNALY 181993 Query: 193 PKLVGDQLCTDL 204 P + + LCT + Sbjct: 181992 PTMFSEYLCTSI 181957 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,706,682 Number of sequences in database: 1696 Lambda K H 0.319 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,107,292 Number of Sequences: 1696 Number of extensions: 371557 Number of successful extensions: 2077 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 187 Number of HSP's successfully gapped in prelim test: 64 Number of HSP's that attempted gapping in prelim test: 1712 Number of HSP's gapped (non-prelim): 714 length of query: 498 length of database: 10,568,894 effective HSP length: 104 effective length of query: 394 effective length of database: 10,392,510 effective search space: 4094648940 effective search space used: 4094648940 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)