TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|255071835|ref|XP_002499592.1| O-phosphoseryl-tRNA selenium
transferase [Micromonas sp. RCC299]
         (498 letters)

Database: genome.fa 
           799 sequences; 32,967,507 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_49                                                           377   e-106

>scaffold_49 
          Length = 116333

 Score =  377 bits (967), Expect(2) = e-106
 Identities = 199/443 (44%), Positives = 282/443 (63%), Gaps = 20/443 (4%)
 Frame = +2

Query: 40    RRLPKDGWDDHSIESFLSEAAMMDSNNFLDNVGVGEREARVYSPLVARRHWNLAHGIGRS 99
             RRLP+ G+ D  IE  L+E +MMDSNNF++N+GVGERE R+YS LV +RH+  +HGIGRS
Sbjct: 59204 RRLPEIGYSDKVIELILNEISMMDSNNFIENIGVGEREGRIYSSLVEKRHYGFSHGIGRS 59383

Query: 100   GDVAAEQPKAAGSSLLNKLTNLLVADAMRIAGLEDMGPA--LVLPLATGMTLTLVLLAVK 157
             GD+  +QPKAAGSSL+ KL + LV DAMRIAGLE    +  L+LP+ATGMTL+L ++ +K
Sbjct: 59384 GDITEQQPKAAGSSLIQKLVHYLVLDAMRIAGLESQAASTCLLLPMATGMTLSLAMMTLK 59563

Query: 158   SKRPKTATKVVWCRLDQKTCVKAVLSAGLELVVVSPKLVGDQLCTDLDXXXXXXXXXXXX 217
              K    A  V+W R+DQK+C+K++++AGL  +V+  KL GD + TDLD            
Sbjct: 59564 QKSQSNARYVIWPRIDQKSCLKSIVTAGLIPIVIENKLEGDMIRTDLDAIKSKIIELGPS 59743

Query: 218   XXCCVVTSTSCFAPRAGDACSDVAKMCAELDVGHVVNNAYGVQATALCKEVTKAWRRGRV 277
                CV ++TSCFAPRA D   +++++C E ++GH++NNAYG+Q + +   ++++ + GRV
Sbjct: 59744 NILCVFSTTSCFAPRAPDRIVEISQLCKEHNIGHIINNAYGLQCSKILHAISQSCKLGRV 59923

Query: 278   DAVVQSTDKNFMVPVGGAVVCSGKGNTEIVDAVRKSYPGRASISPVLDLLITLLSMGSHG 337
             DA +QSTDKNFMVPVGGA++ SG  N   ++ + K+YPGRA+ SP+LD+ ITLLSMG  G
Sbjct: 59924 DAYIQSTDKNFMVPVGGAII-SGP-NKVFIEDIAKNYPGRANSSPILDVFITLLSMGKSG 60097

Query: 338   WQRCLEDRGDVYGYMRTKLGECVGEFGERLLDTPG-NPISIGVSLETHAKLSEDGK---- 392
             W   L++R ++  Y + +LG+   EF E+LL T   N IS   SL+  +    + +    
Sbjct: 60098 WSGLLKERKELLVYFQDQLGKLANEFNEKLLSTINENKISFAFSLKNFSSNKNEQQLESE 60277

Query: 393   -----------DVSFFGSMLFSRCVSGTRVVAPGK-RQXXXXXXXXXXXASH-DAYPVPY 439
                          S  GS LFSR  SG RV+   K ++            SH D YP  Y
Sbjct: 60278 LNNNNNNNNDYSPSMLGSQLFSRSCSGARVIDLSKNKKAIVGGLEFNYYGSHIDGYPTSY 60457

Query: 440   FTAAAALGTTREDVDRFCAQLRK 462
              T A A+G T+ ++D+F  +L K
Sbjct: 60458 LTVACAIGVTKSEIDKFIQRLSK 60526



 Score = 28.5 bits (62), Expect(2) = e-106
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 9     LAEGLVSKAYINQGSQATARRSKLVTSLL 37
             L +GLV   Y++Q  Q T++ +K++ SLL
Sbjct: 59010 LCKGLVKSNYVDQAIQGTSQFNKIIESLL 59096


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:50 PM
  Number of letters in database: 32,967,507
  Number of sequences in database:  799
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,140,460
Number of Sequences: 799
Number of extensions: 112042
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 19
length of query: 498
length of database: 10,989,169
effective HSP length: 105
effective length of query: 393
effective length of database: 10,905,274
effective search space: 4285772682
effective search space used: 4285772682
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)