TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    31   0.67 
gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    29   2.5  

>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
               shotgun sequence
          Length = 1971884

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 326     LLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRD 385
               LLS+G       L ER ++    S    KL      +L+HT +  + L  TL  L    D
Sbjct: 1211559 LLSIGKLDVLTNLVERNKLIKVNSTLTNKLFSILTYKLIHTKNGYVQLLQTLAYLSNEVD 1211380

Query: 386     KAVTQLGSMLFTR 398
               +++  +    + R
Sbjct: 1211379 RSLINIVVQYYNR 1211341



 Score = 28.9 bits (63), Expect = 2.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 302     FIQEISKMYPGRASASPSLDVLITLLS 328
               FI + SK  P   S SPS+DVL++LL+
Sbjct: 1476667 FIVQFSKTAPFDKSISPSVDVLVSLLA 1476747


>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
              shotgun sequence
          Length = 2540030

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 24/93 (25%), Positives = 41/93 (44%)
 Frame = -1

Query: 299    NDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEA 358
              N + +Q++     G  +A P L+ L+  +     GY KLL    ++          L + 
Sbjct: 310823 NSNNLQKLYNNLSGIKNADPILNCLLQAIVEELTGYAKLL----DLLLLNFGDYLTLLQL 310656

Query: 359    YNERLLHTPHNPISLAMTLKTLDEHRDKAVTQL 391
              Y+  LLH P+  I +  +L T D     A+ +L
Sbjct: 310655 YS--LLHKPYRKIRIIYSLVTCDHVSPNALYRL 310563


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,191,443
Number of Sequences: 9
Number of extensions: 58353
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 130
length of query: 501
length of database: 2,782,535
effective HSP length: 95
effective length of query: 406
effective length of database: 2,781,680
effective search space: 1129362080
effective search space used: 1129362080
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)