TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: genome.fa 32,746 sequences; 89,612,356 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 331 2e-90 gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 326 5e-89 gb|AAHK01000078.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 32 3.6 gb|AAHK01017932.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 6.1 gb|AAHK01000777.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 6.1 gb|AAHK01000272.1| Trypanosoma cruzi strain CL Brener tcruzi_104... 31 6.1 >gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506389, whole genome shotgun sequence Length = 16727 Score = 331 bits (849), Expect = 2e-90 Identities = 201/523 (38%), Positives = 295/523 (56%), Gaps = 68/523 (13%) Frame = +2 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60 MN + + E VS YV+ G EA R++E L+R +L + +CPE G + +E LH+LA+ Sbjct: 10136 MNERALSLAEGFVSANYVQAGGEALRANERLVRSVLAQRRCPEKGMSDVAIEWLLHQLAL 10315 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVA+ LVARR+Y HGIGRSGDI + QPKAAGSSL++K+TN Sbjct: 10316 MDTNNFPAHVGAGEREGRVAAPLVARRNYGLAHGIGRSGDILSDQPKAAGSSLIHKLTNC 10495 Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTL--------RHKRP---------KAK 163 ++LD+++LAG ++ + V PMATGM+L+L L R + P + + Sbjct: 10496 MMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLRRDEKRKEMPDLLKGAVEDEPR 10675 Query: 164 YIIWPRIDQKSCFKSMITAGFEPVVI-------------------ENVLEGDELRTDLKA 204 Y+IW RIDQK+ K + AGF P ++ E L L+ L Sbjct: 10676 YVIWARIDQKTALKCIEAAGFVPEIVELRHAPLQRKGTCGLGLGSETCLHPFFLQVHLDD 10855 Query: 205 VEAKVQEL-GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCM 263 + A +Q + GP +LC+ STTSCFAPR+PD + +A C +IP++VNNAYGVQS M Sbjct: 10856 IVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHCKFMNIPYVVNNAYGVQSRVIM 11035 Query: 264 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVL 323 + R+GRIDA VQS DKNF+VPVGGA+++G ++ + +Y GRAS SP +D+ Sbjct: 11036 RRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHVVERAAALYAGRASISPIVDLF 11212 Query: 324 ITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH------------------ 365 IT LS+G G+++L + R E+ + + +++ + A E LL Sbjct: 11213 ITALSMGRGGFQRLWEVRYEVLNMVQQGLRRFAMARGEVLLEEEDVNDIAASASAAGSTG 11392 Query: 366 -----------TPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV-VPLGSMQT 413 T N IS A+T+ T+ + +G+ LF V+G RV VP +++ Sbjct: 11393 AAATASCTVRGTHRNDISFAVTMHTVGGAAN--AKAIGARLFRGAVTGPRVIVPDSTIKQ 11566 Query: 414 VSGYTFRGFMSHTNN-YPCAYLNAASAIGMKMQDVDLFIKRLD 455 + G +FR + HT+ PC L A IG ++V ++RL+ Sbjct: 11567 LCGLSFRNYGMHTDEVLPCPLLVMACGIGTTAEEVRGVMERLE 11695 >gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507483, whole genome shotgun sequence Length = 14792 Score = 326 bits (836), Expect = 5e-89 Identities = 200/523 (38%), Positives = 293/523 (56%), Gaps = 68/523 (13%) Frame = -2 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60 MN + + E VS YV+ G EA R++E L+R +L + +CPE G + +E LH+LA+ Sbjct: 14587 MNERALSLAEGFVSAHYVQAGGEALRANERLVRSVLAQRRCPEKGMSDVAIEWLLHQLAL 14408 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRVA+ LVARR+Y HGIGRSGDI + QPKAAGSSL++K+TN Sbjct: 14407 MDTNNFPAHVGAGEREGRVAAPLVARRNYGLAHGIGRSGDILSDQPKAAGSSLIHKLTNC 14228 Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTL----RHKRPK-------------AK 163 ++LD+++LAG ++ + V PMATGM+L+L L R +R K + Sbjct: 14227 MMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLRRDERRKEMPDLLKGAVEDEPR 14048 Query: 164 YIIWPRIDQKSCFKSMITAGFEPVVI-------------------ENVLEGDELRTDLKA 204 Y+IW RIDQK+ K + AGF P ++ E L L+ Sbjct: 14047 YVIWARIDQKTALKCIEAAGFVPELVELRHAPLQRKGTCGLGLGSETCLHPFFLQVHPDD 13868 Query: 205 VEAKVQEL-GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCM 263 + A +Q + GP +LC+ STTSCFAPR+PD + +A C +IP++VNNAYGVQS M Sbjct: 13867 IVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHCKAINIPYVVNNAYGVQSRVIM 13688 Query: 264 HLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVL 323 + R+GRIDA VQS DKNF+VPVGGA+++G ++ + +Y GRAS SP +D+ Sbjct: 13687 RRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHVVERAAALYAGRASISPIVDLF 13511 Query: 324 ITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH------------------ 365 IT LS+G +G+++L R E+ + + +++ + A E LL Sbjct: 13510 ITALSMGRSGFQRLWDVRYEVLNMVQQGLRRFAMARGEVLLEEEDVNDIAASASAAGFTG 13331 Query: 366 -----------TPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV-VPLGSMQT 413 T N IS A+T+ T+ + +G+ LF V+G RV VP +++ Sbjct: 13330 AVATASCTVRGTNRNDISFAVTMHTVGGAAN--AKAIGARLFRGAVTGPRVIVPDSTIKQ 13157 Query: 414 VSGYTFRGFMSHTNN-YPCAYLNAASAIGMKMQDVDLFIKRLD 455 + G +FR + H + PC L A IG ++V ++RL+ Sbjct: 13156 LCGLSFRNYGMHADEVLPCPLLVMACGIGTTAEEVRGVMERLE 13028 >gb|AAHK01000078.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506825, whole genome shotgun sequence Length = 74869 Score = 31.6 bits (70), Expect = 3.6 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Frame = -2 Query: 310 YPGRASASPSLDVLITLLSLG----SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH 365 Y A S ++ + LS G S + ++KERK+ S KK + YN + Sbjct: 6021 YASSALLSTNMKFSVAALSEGEESASEAQRGIIKERKKEKEEESEMRKKENIPYNSQREV 5842 Query: 366 TPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG 421 P + LAMT K+ D+ T LG + ++SG VVP+ + + RG Sbjct: 5841 LPLDRRGLAMT-KSSDK---PTSTSLGPQV-AEELSGTAVVPIFRAEAACEQSHRG 5689 >gb|AAHK01017932.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053413547, whole genome shotgun sequence Length = 944 Score = 30.8 bits (68), Expect = 6.1 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 12/168 (7%) Frame = +2 Query: 2 NRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIM 61 N + G RL+ PA+ Q C AR ++ +G C NG + L L + + A + Sbjct: 371 NHGAAVTGNRLLLPAWQLQACAARLVVVRNDDAVVARGTC--NGAAVADLRLHVADDAAL 544 Query: 62 DSNNFLGNCGVGE-----REGRVASALVARRHYRFIHG--IGRSGDISAVQPKAAGSSLL 114 + GE E ++S RRH++ +H + R + A + +L Sbjct: 545 RDLAKRQHIANGEWCLHAAEDGLSSEHALRRHHQLLHAAVLVRMPEFHAGERGTTAGLML 724 Query: 115 NKITN----SLVLDIIKLAGVHTVANCFVVPMATG-MSLTLCFLTLRH 157 N++ + ++ L ++K A + V + G ++LT +L H Sbjct: 725 NRLDHTTHKTMTLGVVKNAELRGAKTLVAVHLVDGPVALTAGEHSLSH 868 >gb|AAHK01000777.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053508299, whole genome shotgun sequence Length = 24102 Score = 30.8 bits (68), Expect = 6.1 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 12/168 (7%) Frame = +3 Query: 2 NRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIM 61 N + G L+ PA+ Q C AR ++ +G C NG + L L + + A + Sbjct: 14724 NHGAAVTGNGLLLPAWQLQACAARLVVVRDDDAVVARGTC--NGAAVADLRLHVADDAAL 14897 Query: 62 DSNNFLGNCGVGE-----REGRVASALVARRHYRFIHG--IGRSGDISAVQPKAAGSSLL 114 + GE E R++S RRH++ +H + R + A + +L Sbjct: 14898 RDLAKRQHIANGEWCLHAAEDRLSSEHALRRHHQLLHAAVLVRMPEFHAGERGTTAGLML 15077 Query: 115 NKITN----SLVLDIIKLAGVHTVANCFVVPMATG-MSLTLCFLTLRH 157 N++ + ++ L ++K A + V + G ++LT +L H Sbjct: 15078 NRLDHTTHKTMTLGVVKNAELRGTETLVAVQLVDGPVALTAGEHSLSH 15221 >gb|AAHK01000272.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053511181, whole genome shotgun sequence Length = 44981 Score = 30.8 bits (68), Expect = 6.1 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 12/168 (7%) Frame = -2 Query: 2 NRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIM 61 N + G RL+ PA+ Q C AR ++ +G C NG + L L + + A + Sbjct: 26032 NHGAAVTGNRLLLPAWQLQACAARLVVVRNDDAVVARGTC--NGAAVADLRLHVADDAAL 25859 Query: 62 DSNNFLGNCGVGE-----REGRVASALVARRHYRFIHG--IGRSGDISAVQPKAAGSSLL 114 + GE E ++S RRH++ +H + R + A + +L Sbjct: 25858 RDLAKRQHIANGEWCLHAAEDGLSSEHALRRHHQLLHAAVLVRMPEFHAGERGTTAGLML 25679 Query: 115 NKITN----SLVLDIIKLAGVHTVANCFVVPMATG-MSLTLCFLTLRH 157 N++ + ++ L ++K A + V + G ++LT +L H Sbjct: 25678 NRLDHTTHKTMTLGVVKNAELRGAKTLVAVHLVDGPVALTAGEHSLSH 25535 Database: genome.fa Posted date: Jan 19, 2010 5:13 PM Number of letters in database: 89,612,356 Number of sequences in database: 32,746 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,641,256 Number of Sequences: 32746 Number of extensions: 853375 Number of successful extensions: 4060 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2659 Number of HSP's successfully gapped in prelim test: 153 Number of HSP's that attempted gapping in prelim test: 943 Number of HSP's gapped (non-prelim): 3445 length of query: 501 length of database: 29,870,785 effective HSP length: 111 effective length of query: 390 effective length of database: 26,235,979 effective search space: 10232031810 effective search space used: 10232031810 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)