TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: genome.fa 218 sequences; 41,633,360 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_38 98 8e-45 scaffold_20 33 0.85 scaffold_19 31 3.2 scaffold_29 30 5.5 scaffold_21 30 5.5 scaffold_13 30 7.2 >scaffold_38 Length = 375890 Score = 98.2 bits (243), Expect(4) = 8e-45 Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 68/172 (39%) Frame = -2 Query: 238 LAVICANYDIPHIVNNAYGVQSSKCMHLIQQGA--------------------------- 270 + +C + +PH+VNNAYG+QS+KC+HLI+ G Sbjct: 202597 VGAVCKDLQVPHVVNNAYGLQSTKCIHLIETGG*FVPLWE*TLRTRNASTHARPFAPPDT 202418 Query: 271 --RVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----------------- 311 R GR+D VQS DKN MVPVGG+I+A + I +S+ YP Sbjct: 202417 AQRAGRVDFVVQSTDKNLMVPVGGSIVASSTPALITALSQTYPGQSQRILRGLG*PATCP 202238 Query: 312 ----------------------GRASASPSLDVLITLLSLGSNGYKKLLKER 341 GRAS+ P +DV +TLLSLG G+KKLL+ER Sbjct: 202237 LWS*SVLIVLVDPCPLLLASISGRASSGPIVDVFLTLLSLGQTGFKKLLEER 202082 Score = 80.1 bits (196), Expect(2) = 3e-26 Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 7/66 (10%) Frame = -3 Query: 34 LLLEKGKC-------PENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVAR 86 LL + G C PE GW + T+EL +HELAIMDSNNF G+ G+GEREGR+A+ +VAR Sbjct: 203718 LLSDAGGCLLL*HQWPEQGWSDETIELLMHELAIMDSNNFPGSTGLGEREGRIAAGIVAR 203539 Query: 87 RHYRFI 92 RH+R + Sbjct: 203538 RHFRCV 203521 Score = 64.7 bits (156), Expect(4) = 8e-45 Identities = 28/54 (51%), Positives = 38/54 (70%) Frame = -3 Query: 183 GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLE 236 G+ P++IE GD+L TD+ A+ ++E GPD ILC+ +TTSCFAPR PD E Sbjct: 202863 GYTPIIIELRRSGDQLATDVTAIRQAIEEHGPDAILCVVTTTSCFAPRSPDE*E 202702 Score = 57.8 bits (138), Expect(2) = 3e-26 Identities = 25/42 (59%), Positives = 34/42 (80%) Frame = -2 Query: 89 YRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG 130 YR HGIGRSGDI+A+QPKAAGSSLL ++T + L ++++ G Sbjct: 203443 YRLGHGIGRSGDIAAIQPKAAGSSLLARLTEKMTLQLLRVVG 203318 Score = 41.2 bits (95), Expect(4) = 8e-45 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -1 Query: 97 RSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLR 156 R+ D A P+ + +L + + S V G+ + C ++P+ATGM+L LTLR Sbjct: 203279 RAPDALA*WPRESARALSSSLHMSCV-------GLRSTKQCILLPVATGMALVFAMLTLR 203121 Query: 157 HKRPKAKYIIWP 168 +RP A+ + P Sbjct: 203120 PRRPSARCVTSP 203085 Score = 37.0 bits (84), Expect(4) = 8e-45 Identities = 12/21 (57%), Positives = 19/21 (90%) Frame = -2 Query: 164 YIIWPRIDQKSCFKSMITAGF 184 Y++W RIDQK+C K+++TAG+ Sbjct: 202999 YVVWSRIDQKTCLKAIVTAGW 202937 Score = 33.5 bits (75), Expect(2) = 0.001 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 404 RVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIG 441 RVV + + V+G F G+ +H ++YP Y+ A+AIG Sbjct: 201576 RVVSGHAEKKVAGLQFTGYGAHVDDYPSPYVTVAAAIG 201463 Score = 27.7 bits (60), Expect(2) = 0.001 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 388 VTQLGSMLFTRQVSGAR 404 VT LGS LF R+VSGAR Sbjct: 201733 VTYLGSQLFLRRVSGAR 201683 >scaffold_20 Length = 720398 Score = 32.7 bits (73), Expect = 0.85 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = -2 Query: 18 VRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELA---IMDSNNFLGNCGVGE 74 VR C SH H++ +GKC GW S L+ LA ++++ +F+ C Sbjct: 473527 VRMRCPVLTSHRHVVLSKDSQGKCWGRGWRASALKS*ASALAQPGLVETKHFVVKCSA** 473348 Query: 75 REGR 78 R+ R Sbjct: 473347 RQAR 473336 >scaffold_19 Length = 781963 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 5 SFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGW 46 SFAA R +P +RQ C R + HL + CPE+ W Sbjct: 413718 SFAARHRSNAP*QLRQSCR*RSNPNHLEQRCQYCSHCPEHEW 413843 >scaffold_29 Length = 584948 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -3 Query: 310 YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSE---AYNERLLHT 366 +PG S SL+ I + +LGS KLLK R + +L +Q+ S+ + + +L Sbjct: 236400 FPGCTQPSVSLESCIQVHNLGSLDRAKLLKTR-HVVKFLHSQMSAPSKH**QFEDMVLAA 236224 Query: 367 PHNP 370 PH P Sbjct: 236223 PHAP 236212 >scaffold_21 Length = 711696 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 15 PAYVRQGCEARRSHEHLIRLLLEKGKCP 42 PA R GC+ SHEH +R L+E+ + P Sbjct: 8854 PAECRCGCQGTCSHEHHLRCLVEQHEFP 8771 >scaffold_13 Length = 1102880 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 67 LGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 113 LG G G R G ALV +R I+ +G G+ +PK G S+ Sbjct: 352844 LGGAGAGARSGASGVALVVVPVFRGIYLLG*PGNRGRKRPKKCGRSI 352984 Database: genome.fa Posted date: Jan 19, 2010 5:06 PM Number of letters in database: 41,633,360 Number of sequences in database: 218 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,921,814 Number of Sequences: 218 Number of extensions: 385564 Number of successful extensions: 2104 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 1958 Number of HSP's gapped (non-prelim): 489 length of query: 501 length of database: 13,877,786 effective HSP length: 106 effective length of query: 395 effective length of database: 13,854,678 effective search space: 5472597810 effective search space used: 5472597810 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)