TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66814240|ref|XP_641299.1| O-phosphoseryl-tRNA selenium
transferase [Dictyostelium discoideum AX4]
         (479 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53...   202   9e-83

>gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53, whole genome shotgun
             sequence
          Length = 75531

 Score =  202 bits (513), Expect(2) = 9e-83
 Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 7/258 (2%)
 Frame = +3

Query: 1     MNLKNLETCKGLIKGSYIDQAIQGTSQFNKLLETLLIHKKLPNIGYNDKIIELILNEISL 60
             MN ++    + L+  +Y+ Q +       KL+ +LL  ++LP+ G++D  +EL+L  +S 
Sbjct: 22329 MNARSAALAQHLVPSTYVQQGLDAVRSREKLVTSLLAQRRLPDEGWDDASVELLLQTLSA 22508

Query: 61    MDSNNFIENIGVGEREGRIYSGLVEKRHYGFAHGIGRSGDITEQQPKAAGSSLIQKLTHS 120
             MDSNNF  + G GERE R++S LV +RH+  AHG+GRSGD+   QPKAAGSSL+ +L ++
Sbjct: 22509 MDSNNFRGSAGAGEREARVFSPLVARRHFYLAHGVGRSGDVAAVQPKAAGSSLLVQLANA 22688

Query: 121   LVLDAMKLAGLEQSSLSNCXXXXXXXXXXXXXXXXXXKSINANNKRYVLWPRIDQKSCLK 180
             L  D ++LAG+     +                       +A   RYV+WPRIDQKSC K
Sbjct: 22689 LAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLKESKPHA---RYVIWPRIDQKSCFK 22859

Query: 181   SIITAGLIPIVIPNQL-------DGDMIRTDLVAIEDKIKELGVDNILCVFSTTSCFAPR 233
             SI+ AGL P+V+ N L        G  ++TDLV +   + + G D++L V STTSCFAPR
Sbjct: 22860 SIVAAGLTPLVLANVLVEQEDGKPGGFLKTDLVGMTALMDQYGSDSVLAVMSTTSCFAPR 23039

Query: 234   VPDKIIEISEICKRYNIG 251
               D + EI+++C+  N+G
Sbjct: 23040 AYDSVEEIAKLCEERNVG 23093



 Score =  125 bits (315), Expect(2) = 9e-83
 Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 24/149 (16%)
 Frame = +1

Query: 252   HIINNAYGLQCSKILHNISQACKLGRVDAFIQSTDKNFMVPVGGAIISGPNSEFIDQISR 311
             H+INNAYG+Q SK +H++ +A + GRVDA +QS DKNFMVPVGGAI+   + E +D++++
Sbjct: 23170 HVINNAYGVQASKCVHHVERAMRTGRVDAVVQSLDKNFMVPVGGAIVCSASREVVDRVAK 23349

Query: 312   NYPGRANSSPILDVFITLLSM------------------------GKQGWLNLLKERKEL 347
              YPGRA+++P LD FIT+L M                        GK G+  LL+ERK L
Sbjct: 23350 FYPGRASATPTLDFFITMLQMVGQFDLCFVVVLGE*CYSTVMCCQGKHGYKRLLEERKHL 23529

Query: 348   LIYFNEQLSKFALENNEKLLNTINENKIS 376
               Y N+QL   A +  E++L  ++ N+++
Sbjct: 23530 AAYMNQQLETLAADERERVL-LVSNNEVA 23613



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +2

Query: 432   IGGLEFNNYGSHIDNYSTSYLTVACAIGITKLEIDTFIQRLSKLFNK 478
             I G EFN +G+H D +  +Y+T ACA+G+ + E+D  + +L K  ++
Sbjct: 23900 IAGYEFNAFGAHHDGFPVAYVTFACALGMQRGEVDLLVTKLRKTIHE 24040


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,416,295
Number of Sequences: 5578
Number of extensions: 438692
Number of successful extensions: 1726
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 469
length of query: 479
length of database: 26,017,032
effective HSP length: 110
effective length of query: 369
effective length of database: 25,403,452
effective search space: 9373873788
effective search space used: 9373873788
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)