TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch...    29   2.1  

>gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome
              shotgun sequence
          Length = 2540030

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 259    TSCFAPRSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAA 304
              +SCF P SPDN  A       +D  +L+ N  G  SEE I  I  A
Sbjct: 740038 SSCF-PLSPDNKNANPRTTRENDQLNLIFNVLGTPSEEDINCIQKA 740172



 Score = 27.7 bits (60), Expect = 6.0
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
 Frame = -3

Query: 419    KQSLFGSVLFARGITGA------------RVVPSNQSKTTIEG--CEFINFGSHTAEQHG 464
              ++ +FG +    G++GA            R       ++ + G  C+F+ F S  A +H 
Sbjct: 388170 RRDIFGQIALVGGLSGASGLQERLNIEMNRASAKTPQESPLSGTKCKFVAFNSKAASRHA 387991

Query: 465    GYLNVA 470
              G++  +
Sbjct: 387990 GWIGAS 387973



 Score = 27.3 bits (59), Expect = 7.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 390    FAENIGECVY-DVPENEISLAMTLSTIPPTKQSLFGSVLFARGITGARVVP 439
              F  N+ + V+    +NEI   +++S   P+K SLFGS +F     G R  P
Sbjct: 205813 FDPNLADRVFKSKTKNEIP-KLSMSLTHPSKLSLFGSSIFQPNSRGLRKAP 205664


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,107,606
Number of Sequences: 9
Number of extensions: 54577
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 74
length of query: 523
length of database: 2,782,535
effective HSP length: 95
effective length of query: 428
effective length of database: 2,781,680
effective search space: 1190559040
effective search space used: 1190559040
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)