TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis
brenneri]
         (523 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_104...   243   5e-64
gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_104...   243   5e-64
gb|AAHK01004581.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   3.8  
gb|AAHK01001923.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   3.8  
gb|AAHK01000416.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    32   3.8  

>gb|AAHK01001263.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507483, whole genome
             shotgun sequence
          Length = 14792

 Score =  243 bits (621), Expect = 5e-64
 Identities = 169/481 (35%), Positives = 250/481 (51%), Gaps = 69/481 (14%)
 Frame = -2

Query: 76    PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
             PE+G S+  ++  L  L+  DTNN      VGAGEREGRV  PLV R +  L HGIGRSG
Sbjct: 14464 PEKGMSDVAIEWLLHQLALMDTNNFP--AHVGAGEREGRVAAPLVARRNYGLAHGIGRSG 14291

Query: 136   NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSW---- 191
             ++L  QPKA GSS++  L+N              ++S +V P+ TGM+LSL + +     
Sbjct: 14290 DILSDQPKAAGSSLIHKLTNCMMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLR 14111

Query: 192   ----RRRRP---------KAKYVIWLRIDQKSSLKSIYHAGFEPIIVE----PIRDHDA- 233
                 R+  P         + +YVIW RIDQK++LK I  AGF P +VE    P++     
Sbjct: 14110 RDERRKEMPDLLKGAVEDEPRYVIWARIDQKTALKCIEAAGFVPELVELRHAPLQRKGTC 13931

Query: 234   --------------LITNVESVNRIVEQRG--EEILCVMTTTSCFAPRSPDNIEAISAIC 277
                           L  + + +   +++ G  + +LCV++TTSCFAPR PD++ AI+  C
Sbjct: 13930 GLGLGSETCLHPFFLQVHPDDIVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHC 13751

Query: 278   AAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSH 337
              A ++P++VNNAYG+QS   +R++ AA   GR+DA+VQS DKNF VPVGGA+++  K+  
Sbjct: 13750 KAINIPYVVNNAYGVQSRVIMRRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHV 13574

Query: 338   IQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGEC 397
             ++  A  Y GRAS  P  DL +T L  G+SGF   ++ + ++   +++ L  FA   GE 
Sbjct: 13573 VERAAALYAGRASISPIVDLFITALSMGRSGFQRLWDVRYEVLNMVQQGLRRFAMARGEV 13394

Query: 398   VYDVPE-----------------------------NEISLAMTLSTI-PPTKQSLFGSVL 427
             + +  +                             N+IS A+T+ T+         G+ L
Sbjct: 13393 LLEEEDVNDIAASASAAGFTGAVATASCTVRGTNRNDISFAVTMHTVGGAANAKAIGARL 13214

Query: 428   FARGITGARVVPSNQSKTTIEGCEFINFGSHTAE-QHGGYLNVACSIGMTEHELEEFFTR 486
             F   +TG RV+  + +   + G  F N+G H  E      L +AC IG T  E+     R
Sbjct: 13213 FRGAVTGPRVIVPDSTIKQLCGLSFRNYGMHADEVLPCPLLVMACGIGTTAEEVRGVMER 13034

Query: 487   L 487
             L
Sbjct: 13033 L 13031


>gb|AAHK01001140.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506389, whole genome
             shotgun sequence
          Length = 16727

 Score =  243 bits (621), Expect = 5e-64
 Identities = 171/481 (35%), Positives = 248/481 (51%), Gaps = 69/481 (14%)
 Frame = +2

Query: 76    PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135
             PE+G S+  ++  L  L+  DTNN      VGAGEREGRV  PLV R +  L HGIGRSG
Sbjct: 10259 PEKGMSDVAIEWLLHQLALMDTNNFP--AHVGAGEREGRVAAPLVARRNYGLAHGIGRSG 10432

Query: 136   NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWR--R 193
             ++L  QPKA GSS++  L+N              ++S +V P+ TGM+LSL + +    R
Sbjct: 10433 DILSDQPKAAGSSLIHKLTNCMMLDLLRLAGAPSIESAVVFPMATGMTLSLVLRALALLR 10612

Query: 194   RRPKAK---------------YVIWLRIDQKSSLKSIYHAGFEPIIVE----PIRDHDA- 233
             R  K K               YVIW RIDQK++LK I  AGF P IVE    P++     
Sbjct: 10613 RDEKRKEMPDLLKGAVEDEPRYVIWARIDQKTALKCIEAAGFVPEIVELRHAPLQRKGTC 10792

Query: 234   --------------LITNVESVNRIVEQRG--EEILCVMTTTSCFAPRSPDNIEAISAIC 277
                           L  +++ +   +++ G  + +LCV++TTSCFAPR PD++ AI+  C
Sbjct: 10793 GLGLGSETCLHPFFLQVHLDDIVAAIQRVGGPKHVLCVLSTTSCFAPRIPDDVLAIAKHC 10972

Query: 278   AAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSH 337
                ++P++VNNAYG+QS   +R++ AA   GR+DA+VQS DKNF VPVGGA+++  K+  
Sbjct: 10973 KFMNIPYVVNNAYGVQSRVIMRRLDAAMRLGRIDAMVQSGDKNFLVPVGGAVLSG-KKHV 11149

Query: 338   IQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGEC 397
             ++  A  Y GRAS  P  DL +T L  G+ GF   +  + ++   +++ L  FA   GE 
Sbjct: 11150 VERAAALYAGRASISPIVDLFITALSMGRGGFQRLWEVRYEVLNMVQQGLRRFAMARGEV 11329

Query: 398   VYDVPE-----------------------------NEISLAMTLSTI-PPTKQSLFGSVL 427
             + +  +                             N+IS A+T+ T+         G+ L
Sbjct: 11330 LLEEEDVNDIAASASAAGSTGAAATASCTVRGTHRNDISFAVTMHTVGGAANAKAIGARL 11509

Query: 428   FARGITGARVVPSNQSKTTIEGCEFINFGSHTAE-QHGGYLNVACSIGMTEHELEEFFTR 486
             F   +TG RV+  + +   + G  F N+G HT E      L +AC IG T  E+     R
Sbjct: 11510 FRGAVTGPRVIVPDSTIKQLCGLSFRNYGMHTDEVLPCPLLVMACGIGTTAEEVRGVMER 11689

Query: 487   L 487
             L
Sbjct: 11690 L 11692


>gb|AAHK01004581.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509691, whole genome
            shotgun sequence
          Length = 1865

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 395  GECVYDVPENEISLAMTLSTIPPTKQSLFGSVLF 428
            GEC+  +P     L +TLS+IP T   LF  VLF
Sbjct: 1155 GECISLLPSTPPPLTLTLSSIPLTSHLLFCFVLF 1054


>gb|AAHK01001923.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506205, whole genome
            shotgun sequence
          Length = 8533

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 402  PENEISLAMTLSTIPPTKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFG 456
            P +  SL  ++S + P+  S+   + F+     AR+VPS+   + +    FIN G
Sbjct: 6668 PSSSASLVCSISGVMPSGPSVDHEIYFSSSSGVARIVPSSSRLSCVPSSFFINVG 6504


>gb|AAHK01000416.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053507991, whole genome
            shotgun sequence
          Length = 36758

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 402  PENEISLAMTLSTIPPTKQSLFGSVLFARGITGARVVPSNQSKTTIEGCEFINFG 456
            P +  SL  ++S + P+  S+   + F+     AR+VPS+   + +    FIN G
Sbjct: 3094 PSSSASLVCSISGVMPSGPSVDHEIYFSSSSGVARIVPSSSRLSCVPSSFFINVG 3258


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,722,580
Number of Sequences: 32746
Number of extensions: 1063116
Number of successful extensions: 6332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4119
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 5535
length of query: 523
length of database: 29,870,785
effective HSP length: 111
effective length of query: 412
effective length of database: 26,235,979
effective search space: 10809223348
effective search space used: 10809223348
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)