TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis brenneri] (523 letters) Database: genome.fa 5578 sequences; 78,051,097 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53... 165 2e-40 gb|AAQY01000724.1| Phytophthora sojae strain P6497 Psojae_Cont72... 32 3.6 gb|AAQY01000382.1| Phytophthora sojae strain P6497 Psojae_Cont38... 31 6.2 gb|AAQY01001188.1| Phytophthora sojae strain P6497 Psojae_Cont11... 30 8.1 gb|AAQY01000186.1| Phytophthora sojae strain P6497 Psojae_Cont18... 30 8.1 >gb|AAQY01000053.1| Phytophthora sojae strain P6497 Psojae_Cont53, whole genome shotgun sequence Length = 75531 Score = 165 bits (417), Expect = 2e-40 Identities = 89/217 (41%), Positives = 134/217 (61%), Gaps = 8/217 (3%) Frame = +3 Query: 74 QIPEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGR 133 ++P+EGW + +++L L LS+ D+NN GAGERE RV +PLV R H L HG+GR Sbjct: 22446 RLPDEGWDDASVELLLQTLSAMDSNNFRGS--AGAGEREARVFSPLVARRHFYLAHGVGR 22619 Query: 134 SGNLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMSLSLCMTSWRR 193 SG++ +QPKA GSS+L L+N V++ +V+P+ TGMSL+L + + Sbjct: 22620 SGDVAAVQPKAAGSSLLVQLANALAKDVLRLAGMRAVQAALVLPVATGMSLTLVLLQLKE 22799 Query: 194 RRPKAKYVIWLRIDQKSSLKSIYHAGFEPIIV-------EPIRDHDALITNVESVNRIVE 246 +P A+YVIW RIDQKS KSI AG P+++ E + L T++ + +++ Sbjct: 22800 SKPHARYVIWPRIDQKSCFKSIVAAGLTPLVLANVLVEQEDGKPGGFLKTDLVGMTALMD 22979 Query: 247 QRG-EEILCVMTTTSCFAPRSPDNIEAISAICAAHDV 282 Q G + +L VM+TTSCFAPR+ D++E I+ +C +V Sbjct: 22980 QYGSDSVLAVMSTTSCFAPRAYDSVEEIAKLCEERNV 23090 Score = 102 bits (255), Expect(2) = 7e-25 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 58/226 (25%) Frame = +1 Query: 269 NIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGA 328 +++ ++ +C H++NNAYG+Q+ + + + A GRVDAVVQSLDKNF VPVGGA Sbjct: 23131 HMKGMTVVCCVK--AHVINNAYGVQASKCVHHVERAMRTGRVDAVVQSLDKNFMVPVGGA 23304 Query: 329 LIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLY------------------------Q 364 ++ + + + +A+ YPGRAS+ P+ D +T+L Q Sbjct: 23305 IVCSASREVVDRVAKFYPGRASATPTLDFFITMLQMVGQFDLCFVVVLGE*CYSTVMCCQ 23484 Query: 365 GQSGFLEPFNKQKQMFLKMRRKLNSFAENIGECVYDVPENE------------------- 405 G+ G+ ++K + M ++L + A + E V V NE Sbjct: 23485 GKHGYKRLLEERKHLAAYMNQQLETLAADERERVLLVSNNEVALVDCCVGGWQLGGISIS 23664 Query: 406 ------ISLAMTLSTI---------PPTKQSLFGSVLFARGITGAR 436 IS AMTL T + +L G++LF+RG++GAR Sbjct: 23665 NALHAQISFAMTLGTFCSDVTDLQEKSRQLTLLGAMLFSRGVSGAR 23802 Score = 31.6 bits (70), Expect(2) = 7e-25 Identities = 18/65 (27%), Positives = 31/65 (47%) Frame = +2 Query: 438 VPSNQSKTTIEGCEFINFGSHTAEQHGGYLNVACSIGMTEHELEEFFTRLASSYAKFVRQ 497 V S + I G EF FG+H Y+ AC++GM E++ T+L + ++ + Sbjct: 23873 VVSCLDRKAIAGYEFNAFGAHHDGFPVAYVTFACALGMQRGEVDLLVTKLRKTIHEWRTK 24052 Query: 498 MAKGD 502 K + Sbjct: 24053 RVKAE 24067 >gb|AAQY01000724.1| Phytophthora sojae strain P6497 Psojae_Cont724, whole genome shotgun sequence Length = 388713 Score = 31.6 bits (70), Expect = 3.6 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 2/160 (1%) Frame = -1 Query: 325 VGGALIAAFKQSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMR 384 +GG ++AA+KQ A+ + + S+ S +L + SGF + +Q Sbjct: 154440 MGGVVVAAYKQEEDDALMR----KLDSLASSKRLLLVEPSQASGFSSTAGQSEQ------ 154291 Query: 385 RKLNSFAENIGECVYDVPENEISLAMTLSTIPPTKQSLFGSVLFARGITGARVVPSNQSK 444 A C ++ E + L ++ + + Q L SV+F + + + + S Sbjct: 154290 ---RGSAGTDPPCPMEIVERRVELFKSMGAVFTSVQELAASVIFVKAPSTSNDSAFSSSL 154120 Query: 445 TTIEG--CEFINFGSHTAEQHGGYLNVACSIGMTEHELEE 482 + G + ++F H + L + EHE EE Sbjct: 154119 ASYAGSSVQVMSFPEHLS------LRSTSATSTAEHEKEE 154018 >gb|AAQY01000382.1| Phytophthora sojae strain P6497 Psojae_Cont382, whole genome shotgun sequence Length = 10792 Score = 30.8 bits (68), Expect = 6.2 Identities = 25/89 (28%), Positives = 35/89 (39%) Frame = +3 Query: 265 RSPDNIEAISAICAAHDVPHLVNNAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVP 324 R+P + A +AI A V H+VN + E K+A E G+ V Sbjct: 9081 RTPWSRAACTAISAKRQVAHVVNGTLHVDREACSLKLARWRERGKCG-----------VA 9227 Query: 325 VGGALIAAFKQSHIQAIAQAYPGRASSIP 353 +GGA A + YP AS+ P Sbjct: 9228 IGGAACVALLPPRWGSQQNTYPTEASTEP 9314 >gb|AAQY01001188.1| Phytophthora sojae strain P6497 Psojae_Cont1188, whole genome shotgun sequence Length = 154471 Score = 30.4 bits (67), Expect = 8.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 335 QSHIQAIAQAYPGRASSIPSRDLVLTLLYQGQSG 368 + H+Q I+ YPGR PSR+ ++L +SG Sbjct: 86906 KQHLQRISALYPGRVGVTPSREAWASMLLAQRSG 87007 >gb|AAQY01000186.1| Phytophthora sojae strain P6497 Psojae_Cont186, whole genome shotgun sequence Length = 434661 Score = 30.4 bits (67), Expect = 8.1 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +2 Query: 100 RVDMIPVGAGEREGRVLTPLVQRLH-SNLTHGIGRSGNLLEIQPKALGSSM 149 R+ ++ +GA ER RVL Q LH S+ HG GR ++ +QP A G ++ Sbjct: 216062 RLHVVELGASERTVRVL----QLLHKSSERHGHGRLTRVIALQPCAQGRAV 216202 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 78,051,097 Number of sequences in database: 5578 Lambda K H 0.319 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,631,144 Number of Sequences: 5578 Number of extensions: 798541 Number of successful extensions: 5084 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 596 Number of HSP's successfully gapped in prelim test: 183 Number of HSP's that attempted gapping in prelim test: 3615 Number of HSP's gapped (non-prelim): 2741 length of query: 523 length of database: 26,017,032 effective HSP length: 111 effective length of query: 412 effective length of database: 25,397,874 effective search space: 10463924088 effective search space used: 10463924088 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 66 (30.0 bits)