TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|341899378|gb|EGT55313.1| CBN-SECS-1 protein [Caenorhabditis brenneri] (523 letters) Database: genome.fa 1696 sequences; 31,706,682 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value mex400p23.q1k 231 8e-61 mex557h22.p1k 32 1.2 mex508o06.p1k 30 3.4 mex155b06.q1k 30 3.4 1036_mexFOS1_10g08.p1kpIBF 30 4.4 mex205b01.q1k 30 4.4 mex578f17.q1k 29 7.5 mex220o13.p1k 29 9.8 >mex400p23.q1k Length = 34044 Score = 231 bits (590), Expect = 8e-61 Identities = 176/548 (32%), Positives = 253/548 (46%), Gaps = 136/548 (24%) Frame = +2 Query: 76 PEEGWSEHTLDLFLSWLSSHDTNNRVDMIPVGAGEREGRVLTPLVQRLHSNLTHGIGRSG 135 P++G ++ ++L L LS DTNN VG GEREGRV++ LV+ H LTHGIGRSG Sbjct: 6068 PDDGLTDAAIELILRQLSLMDTNNFAHH--VGGGEREGRVISSLVRMRHFGLTHGIGRSG 6241 Query: 136 NLLEIQPKALGSSMLACLSNEFXXXXXXXXXXXXVKSCIVVPLCTGMS------------ 183 ++L QPKA GSS+L ++N + +VVP+ TGM+ Sbjct: 6242 DVLSEQPKAAGSSLLYKITNVLMLDLIRQAGAPSTAAAVVVPMATGMTLALVLRCVAKAH 6421 Query: 184 ------------LSLCMTSWRRRRPKA---------------------------KYVIWL 204 L +T+ R A +YVIW Sbjct: 6422 MKELMEEAEAVQLQRTVTTDSRSATSAAQVQEPPMNEADRARHDRTSLPVPATPRYVIWP 6601 Query: 205 RIDQKSSLKSIYHAGFEPIIVE-----PI----------------RDHDALIT------- 236 RIDQK++LK I AG P+ V+ P+ RD D++ + Sbjct: 6602 RIDQKTALKCIDAAGLVPVPVQLRPAVPLARSAAPCVSTNRNNLDRDQDSIASPSTRTSS 6781 Query: 237 -------NVESVNRIVEQRG--EEILCVMTTTSCFAPRSPDNIEAISAICAAHDVPHLVN 287 +V+ V V G +++CV++TTSCFAPR PDN A++ C +P++VN Sbjct: 6782 SSLFLECHVDDVAAAVSAVGGPSQVVCVLSTTSCFAPRLPDNTVALAQYCKKAGIPYVVN 6961 Query: 288 NAYGLQSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPG 347 NAYG+QS + ++ AA GRVD VVQS DKNF VPVGG++I + + +A+A Y G Sbjct: 6962 NAYGVQSRRIMTRLDAAQRLGRVDFVVQSGDKNFLVPVGGSIICSSDKERCKAVAALYAG 7141 Query: 348 RASSIPSRDLVLTLLYQGQSGFLEPFNKQKQMFLKMRRKLNSFAENIGECVY-------- 399 RAS P DL +T L G+ G + + + ++ R+L FA E + Sbjct: 7142 RASMSPIVDLFITALSLGRRGMQALWRDRYKCRARLIRQLRVFARERREVLLVDDSDDDK 7321 Query: 400 ---------------DVPENEISLAMTLST--IPPTKQS--------------------- 421 VP N+IS+A+T+ +P + S Sbjct: 7322 DNEDTVGGSQNTSNAAVPRNDISVAVTMRAYGLPAAEASSSGAQLGSEQAEKVTNWAAAR 7501 Query: 422 LFGSVLFARGITGARVV-PSNQSKTTIEGCEFINFGSH-TAEQHGGYLNVACSIGMTEHE 479 FG+ LF +TG RV+ P+ + TTI GC+F N+G H E L +AC IGM+E E Sbjct: 7502 AFGAQLFRSAVTGPRVITPAPSTPTTIAGCKFRNYGMHQDREPPCPLLVIACGIGMSEAE 7681 Query: 480 LEEFFTRL 487 ++ RL Sbjct: 7682 VDALIARL 7705 >mex557h22.p1k Length = 155688 Score = 32.0 bits (71), Expect = 1.2 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%) Frame = +1 Query: 173 CIVVPLCTGMSLSLCMTSW-----RRRRPKAKYVIWL 204 C+ V LC M +SLC+ +W RR P V+WL Sbjct: 151690 CMYVGLCVRMYISLCVCAWVCDSNRRTTPLCARVLWL 151800 >mex508o06.p1k Length = 48100 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 80 WSEH-TLDLFLSWLSSHDTNNRVDMIPVGAGEREG 113 W+ H T FL W+ +HDT+ R +I A EG Sbjct: 2635 WASHKTPSRFLRWVLAHDTHTRASIIMTAAKTMEG 2739 >mex155b06.q1k Length = 58803 Score = 30.4 bits (67), Expect = 3.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 173 CIVVPLCTGMSLSLCMTSWRRRRPKAK 199 C P C+ +S SLC T W RRR A+ Sbjct: 23087 CCTPPRCSRLSCSLCWTFWWRRRWPAR 23167 >1036_mexFOS1_10g08.p1kpIBF Length = 2371 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Frame = -2 Query: 1 MSFEKLLMSLPGHTECACL------PLCVDCQSRVDECVSGRTARSEDMKASFGKKEGEY 54 +SF L SL G C + PL C S C S + A S + AS G + G Sbjct: 1368 LSFTHLRPSLEGREGCGAIVPSCFVPLSFSCSSNTTPCASVQVA*SSPVVASSGHQRGWR 1189 Query: 55 SR 56 +R Sbjct: 1188 AR 1183 >mex205b01.q1k Length = 18965 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -1 Query: 293 QSEETIRKIAAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAYPGRASSI 352 Q++ + +A G DAVV+ NF+ P G L Q + ++ YPGR S Sbjct: 8639 QAQSKEKTLAKMTRGGLTDAVVKDSRINFEFPCAGPLPPPMLQ--FREVSFNYPGRPSLF 8466 Query: 353 PSRDL 357 + DL Sbjct: 8465 TNLDL 8451 >mex578f17.q1k Length = 57572 Score = 29.3 bits (64), Expect = 7.5 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%) Frame = +2 Query: 250 EEILCVMTTTSCFAPRSPDNIEAISAICAAH------DVPHLVNNAYGL--QSEETIRKI 301 EE L ++ CF P S ++ SAI A D ++ + L Q E + + Sbjct: 33992 EEKLHMVIEEVCFQPDSEVSVSLASAIAARSSSMPPADATSQRSHHFSLSVQDEAKVNTL 34171 Query: 302 AAAHECGRVDAVVQSLDKNFQVPVGGALIAAFKQSHIQAIAQAY 345 + H ++++++ D VP+ A I K+ +Q IA+ Y Sbjct: 34172 RSLHVSVADNSILRTQDSRGAVPLSAAAITIAKK--VQEIAEHY 34297 >mex220o13.p1k Length = 8042 Score = 28.9 bits (63), Expect = 9.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 260 SCFAPRSPDNIEAISAICAAHDVPHLVNNA 289 SC PRSP A+S I +A PH++ +A Sbjct: 1410 SCGFPRSPLFASAVSLIVSAQPTPHMLRSA 1321 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,706,682 Number of sequences in database: 1696 Lambda K H 0.319 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,185,726 Number of Sequences: 1696 Number of extensions: 417535 Number of successful extensions: 3412 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 317 Number of HSP's successfully gapped in prelim test: 112 Number of HSP's that attempted gapping in prelim test: 2624 Number of HSP's gapped (non-prelim): 1534 length of query: 523 length of database: 10,568,894 effective HSP length: 105 effective length of query: 418 effective length of database: 10,390,814 effective search space: 4343360252 effective search space used: 4343360252 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)