T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=82
*
 BAD AVG GOOD
*
SelJ_tetraodon_   :  82
PHYCAscaffold_4   :  82
cons              :  82

SelJ_tetraodon_   MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAA
PHYCAscaffold_4   ---------VVALYAGTNQLFTKVDELVKVFYVGTRVRDAALVAA

cons                       ***:***. ::: :*:: *:*   .      :*.**


SelJ_tetraodon_   RFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQV
PHYCAscaffold_4   FVLEQVILGASVLQAMRMSIRTERLS-VKQRKVIFKAFTKSQLPS

cons               .**:.**...   *:.  **  * .  ** : : :*..      


SelJ_tetraodon_   KENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRD
PHYCAscaffold_4   YEAIQ---------KFGNRGSLPGGFHAVLQPLFVLNDYPTAVRE

cons               * :.          * *  .***.*:*.*: ::. .:*  ***:


SelJ_tetraodon_   TMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH
PHYCAscaffold_4   NIIGGGRTCRRAMFIGACFAAQDGLEVIPEGWIQKTQYFDF----

cons              .:  ** ** *. *****:.** *** ** .* .:** ::     


SelJ_tetraodon_   AKKITSHLQ
PHYCAscaffold_4   --------I

cons                       





__________________________________________________________________________________________________________________________________________________________________________________

T-COFFEE, Version_8.93(Thu Aug 5 18:09:23 CEST 2010)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=98
*
 BAD AVG GOOD
*
PHYCAscaffold_2   :  98
SelJ_tetraodon_   :  98
cons              :  98

PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQN

cons                                               


PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   NDACVAETLAAARFLEHFILNGPDPTALESVIR

cons                                               


PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   QLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQ

cons                                               


PHYCAscaffold_2   ----AHFGKPCSLPGVLQGSVFVLLTSSGYEEA
SelJ_tetraodon_   ELIPAVFVNTUGLPGAFQAALHGVLTATNYVQA

cons                  * * :. .***.:*.::. :**::.* :*


PHYCAscaffold_2   LRANMVAGGDNCSRAIVIGAVIAAARGSDVIPA
SelJ_tetraodon_   VRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPA

cons              :* .* .** .***. .*** :.*  * : ***


PHYCAscaffold_2   EWKHKTKVYSSVQALAEK-----I
SelJ_tetraodon_   SWSSRTQRYESVLEHAKKITSHLQ

cons              .*. :*: *.**   *:*