T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=91
*
 BAD AVG GOOD
*
SelJ_tetraodon_   :  91
PHYCAscaffold_4   :  91
cons              :  91

SelJ_tetraodon_   MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAA
PHYCAscaffold_4   FGN------------------------------------------

cons              :..                                          


SelJ_tetraodon_   RFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQV
PHYCAscaffold_4   ---------------------------RG----------------

cons                                         *                 


SelJ_tetraodon_   KENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNYVQAVRD
PHYCAscaffold_4   --------------------SLPGGFHAVLQPLFVLNDYPTAVRE

cons                                  .***.*:*.*: ::. .:*  ***:


SelJ_tetraodon_   TMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH
PHYCAscaffold_4   NIIGGGRTCRRAMFIGACFAAQDGLEVIPEGWIQKTQYFDFIEAD

cons              .:  ** ** *. *****:.** *** ** .* .:** :: :  .


SelJ_tetraodon_   AKKITSHLQ
PHYCAscaffold_4   ASS-----L

cons              *..      





T-COFFEE, Version_8.93(Thu Aug 5 18:09:23 CEST 2010)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=98
*
 BAD AVG GOOD
*
PHYCAscaffold_2   :  98
SelJ_tetraodon_   :  98
cons              :  98

PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQN

cons                                               


PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   NDACVAETLAAARFLEHFILNGPDPTALESVIR

cons                                               


PHYCAscaffold_2   ---------------------------------
SelJ_tetraodon_   QLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQ

cons                                               


PHYCAscaffold_2   ----AHFGKPCSLPGVLQGSVFVLLTSSGYEEA
SelJ_tetraodon_   ELIPAVFVNTUGLPGAFQAALHGVLTATNYVQA

cons                  * * :. .***.:*.::. :**::.* :*


PHYCAscaffold_2   LRANMVAGGDNCSRAIVIGAVIAAARGSDVIPA
SelJ_tetraodon_   VRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPA

cons              :* .* .** .***. .*** :.*  * : ***


PHYCAscaffold_2   EWKHKTKVYSSVQALAEK-----I
SelJ_tetraodon_   SWSSRTQRYESVLEHAKKITSHLQ

cons              .*. :*: *.**   *:*