TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       27   2.1  
T.congo.pschr.5                                                        26   2.7  
T.congo.pschr.8                                                        25   7.9  

>T.congo.pschr.11 
          Length = 4797796

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 24      IQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64
               +   H  T  FR  + + P  + RFR   +    IR  RGG
Sbjct: 1599390 VATSHHSTNPFRPLVRRTPGFS*RFRQKCSTHMSIREKRGG 1599512


>T.congo.pschr.5 
          Length = 1517473

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 39     PQNPHLAPRFRPNVNDRYQIRRGRGGUC 66
              PQ+  L  R RP  ND    RRG  G C
Sbjct: 250809 PQSRELLRRHRPKSNDV*HERRGDNGGC 250726


>T.congo.pschr.8 
          Length = 2451971

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 19      DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIR 59
               DR+RG+  + R      G I ++P L    +P++ +R  +R
Sbjct: 1925571 DRQRGLSTKGRSKRAQIG*IKKSPPLKNNVKPSMTERAAVR 1925449


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,741,373
Number of Sequences: 11
Number of extensions: 22505
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 116
length of query: 66
length of database: 7,429,315
effective HSP length: 41
effective length of query: 25
effective length of database: 7,428,864
effective search space: 185721600
effective search space used: 185721600
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)