TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

 ***** No hits found ******

  Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa
    Posted date:  Sep 30, 2011 12:44 AM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,064,380
Number of Sequences: 297657
Number of extensions: 277122
Number of successful extensions: 3017
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3014
length of query: 66
length of database: 106,339,350
effective HSP length: 38
effective length of query: 28
effective length of database: 95,028,384
effective search space: 2660794752
effective search space used: 2660794752
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)