TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_1                                                        30   0.41 
PHYCAscaffold_6                                                        28   1.6  
PHYCAscaffold_8                                                        28   2.0  
PHYCAscaffold_49                                                       26   7.8  

>PHYCAscaffold_1 
          Length = 2170955

 Score = 30.4 bits (67), Expect = 0.41
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 17      AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
               AA R++  +P  RR W        NPH    FRP   +RY++R+ R
Sbjct: 1966135 AAKRQKLRRPLLRRFWPQTPLNDTNPHAV--FRPREKERYKLRKHR 1966004



 Score = 29.6 bits (65), Expect = 0.70
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 43     HLAPRFRPNVNDRYQIRRGR 62
              H +PRFR N+ND+ Q+RR R
Sbjct: 411424 HQSPRFRINLNDQKQLRRTR 411483


>PHYCAscaffold_6 
          Length = 1423605

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -1

Query: 20      RERGIQP---EHRRTWQFRGTIPQNPHLAPRF 48
               R R IQP   EHRR W+ R   P NP  A  F
Sbjct: 1068390 RARQIQPSTVEHRRRWRLRTD*PCNPFPATAF 1068295



 Score = 26.6 bits (57), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 23     GIQPEHRRTWQFRGTIPQNPHLAPRFRPNVN 53
              G+Q  HR+TW     +P+   L P+  P  N
Sbjct: 321194 GVQGRHRQTW-----LPKTTRLLPKTTPKAN 321271


>PHYCAscaffold_8 
          Length = 1194346

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 23     GIQPEHRRTWQFRGTIPQNPHLAPRF 48
              G+ PE  R  QF+ ++PQN H  PRF
Sbjct: 508844 GMTPETSR--QFQSSLPQNCHFHPRF 508773


>PHYCAscaffold_49 
          Length = 508508

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 29     RRTWQFRGTIPQNPHL 44
              RR W+FRG++  NP L
Sbjct: 221457 RRLWRFRGSLEPNPEL 221504


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,855,496
Number of Sequences: 917
Number of extensions: 61032
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 304
length of query: 66
length of database: 21,341,249
effective HSP length: 41
effective length of query: 25
effective length of database: 21,303,652
effective search space: 532591300
effective search space used: 532591300
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)