TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig2017 | | 1 to 621 28 1.0 Lt_contig6945 | | 1 to 10175 27 1.7 Lt_contig3500 | | 1 to 4074 27 3.0 Lt_contig34 | | 1 to 30328 27 3.0 Lt_contig4748 | | 1 to 1349 26 3.9 Lt_contig4 | | 1 to 5303 26 3.9 Lt_contig5987 | | 1 to 11060 25 8.7 Lt_contig5563 | | 1 to 5217 25 8.7 Lt_contig4979 | | 1 to 5705 25 8.7 Lt_contig4846 | | 1 to 3022 25 8.7 Lt_contig4649 | | 1 to 5063 25 8.7 Lt_contig4332 | | 1 to 5114 25 8.7 Lt_contig7209 | | 1 to 14653 25 8.7 Lt_contig3503 | | 1 to 2753 25 8.7 Lt_contig6764 | | 1 to 14224 25 8.7 Lt_contig436 | | 1 to 8414 25 8.7 Lt_contig161 | | 1 to 28410 25 8.7 >Lt_contig2017 | | 1 to 621 Length = 621 Score = 28.1 bits (61), Expect = 1.0 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAP 46 RERG+ P HR TW +P P AP Sbjct: 367 RERGVPPIHRTTW---APLPHTPLPAP 438 >Lt_contig6945 | | 1 to 10175 Length = 10175 Score = 27.3 bits (59), Expect = 1.7 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +1 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 + PEHRR W + + N RY++R G GG Sbjct: 1102 VHPEHRRAWYLHSLLGLHSR-------NQRQRYKLR*GAGG 1203 >Lt_contig3500 | | 1 to 4074 Length = 4074 Score = 26.6 bits (57), Expect = 3.0 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 35 RGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 R T Q PH APR P + ++R GRGG Sbjct: 2665 RQTSAQCPHAAPRHDPVRSCGCELR*GRGG 2754 >Lt_contig34 | | 1 to 30328 Length = 30328 Score = 26.6 bits (57), Expect = 3.0 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 Query: 29 RRTWQFRGTIPQNPHLAP 46 RR W RG +P+NP +P Sbjct: 25523 RRQWANRGIVPENPQSSP 25470 >Lt_contig4748 | | 1 to 1349 Length = 1349 Score = 26.2 bits (56), Expect = 3.9 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -3 Query: 17 AADRERGIQP-EHRRTWQFRGTIPQN----PHLAPRFRPNVNDRYQIRRG 61 A R RGI R TWQ R P++ PH AP+ RP+V + RG Sbjct: 561 ARTRTRGICIWRERATWQ-RRRFPRHTSCGPHAAPQQRPHVFYLFNCSRG 415 >Lt_contig4 | | 1 to 5303 Length = 5303 Score = 26.2 bits (56), Expect = 3.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRF 48 RER QPEH T + + NP + RF Sbjct: 3182 RERHKQPEHSNTTKIKRQFTNNPQRSCRF 3096 >Lt_contig5987 | | 1 to 11060 Length = 11060 Score = 25.0 bits (53), Expect = 8.7 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +1 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPR 47 I P+HRR W GT P P + R Sbjct: 6982 IAPKHRRRWLTMGTQPLIPSRSQR 7053 >Lt_contig5563 | | 1 to 5217 Length = 5217 Score = 25.0 bits (53), Expect = 8.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -2 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 A R RG++ RT R T+P+ APR RP +RRG Sbjct: 4628 AQRRSRGMRSSVSRTVTPRTTLPRAGTPAPRHRPQ-----PLRRG 4509 >Lt_contig4979 | | 1 to 5705 Length = 5705 Score = 25.0 bits (53), Expect = 8.7 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%) Frame = +2 Query: 28 HRRTWQFRGTIPQ--NPHLAPR 47 HRR W+ R ++P +PHL R Sbjct: 2648 HRRGWRIRSSLPSCGSPHLLTR 2713 >Lt_contig4846 | | 1 to 3022 Length = 3022 Score = 25.0 bits (53), Expect = 8.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVND 54 +T F PQ PH APR R + D Sbjct: 928 QTASFNVNPPQPPHSAPRLRESAGD 854 >Lt_contig4649 | | 1 to 5063 Length = 5063 Score = 25.0 bits (53), Expect = 8.7 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +3 Query: 29 RRTWQFRGTIPQNPHL 44 R TW+FR +P PH+ Sbjct: 2487 RETWRFRKRVPFTPHV 2534 >Lt_contig4332 | | 1 to 5114 Length = 5114 Score = 25.0 bits (53), Expect = 8.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 A R RG++ RT R T+P+ APR RP +RRG Sbjct: 3568 AQRRSRGMRSSVSRTVTPRTTLPRAGTPAPRHRPQ-----PLRRG 3687 >Lt_contig7209 | | 1 to 14653 Length = 14653 Score = 25.0 bits (53), Expect = 8.7 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 29 RRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRR 60 +R W +G ++PH PR V+D+ Q R Sbjct: 1305 QRAWLLQGWALRHPHREPRGGGRVSDQVQPNR 1210 >Lt_contig3503 | | 1 to 2753 Length = 2753 Score = 25.0 bits (53), Expect = 8.7 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +1 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62 ++ G + EH R W +R N +P P+++D Y GR Sbjct: 133 KKEGSEEEHERVWSYR---TDNVQASP--WPSIHDPYLFVTGR 246 >Lt_contig6764 | | 1 to 14224 Length = 14224 Score = 25.0 bits (53), Expect = 8.7 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 37 TIPQNPHLAPRFRPNVNDRYQIR 59 T+PQ PHL R + + N R IR Sbjct: 5988 TLPQWPHLLTRIQAHPNHRCSIR 6056 >Lt_contig436 | | 1 to 8414 Length = 8414 Score = 25.0 bits (53), Expect = 8.7 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = -2 Query: 29 RRTW----QFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63 RR W ++ T+P P ++ R RP+V R +R RG Sbjct: 1993 RRKWGQAFRYASTVPPPPPVSQRKRPHVG-RVHVRAHRG 1880 >Lt_contig161 | | 1 to 28410 Length = 28410 Score = 25.0 bits (53), Expect = 8.7 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -1 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 RG+ RR W+ G +PQ P AP P + R G Sbjct: 15099 RGLGLRQRR*WRQGGALPQTPR-APASPPGAGAPLRCRDG 14983 Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa Posted date: Sep 30, 2011 12:11 AM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,970,192 Number of Sequences: 7267 Number of extensions: 45016 Number of successful extensions: 480 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 480 length of query: 66 length of database: 10,532,946 effective HSP length: 40 effective length of query: 26 effective length of database: 10,242,266 effective search space: 266298916 effective search space used: 266298916 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (25.0 bits)