TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_20 30 0.36 contig_21 29 0.61 contig_06 28 1.0 contig_16 28 1.4 contig_32 27 1.8 contig_30 27 1.8 contig_27 27 1.8 contig_14 27 3.0 contig_35 26 4.0 contig_17 26 4.0 contig_29 26 5.2 contig_24 25 6.7 contig_36 25 8.8 contig_34 25 8.8 contig_33 25 8.8 contig_28 25 8.8 contig_26 25 8.8 contig_01 25 8.8 >contig_20 Length = 752621 Score = 29.6 bits (65), Expect = 0.36 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRF 48 A R+RG QP+HR+ W+ PRF Sbjct: 373767 ATGRQRGCQPQHRQQWRLLAATHSIAPATPRF 373672 >contig_21 Length = 767234 Score = 28.9 bits (63), Expect = 0.61 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 R++ PE+RR +G++ PH R RP DR+Q R G Sbjct: 628890 RQQCYSPEYRRAPSRKGSMSLVPHRRKRHRP--QDRHQWRPG 629009 >contig_06 Length = 529559 Score = 28.1 bits (61), Expect = 1.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63 ++ G QP H+R+W+ RG P P R +RG G Sbjct: 25782 KKGGEQPTHKRSWRERGNCP----------PTTTTREMTKRGGG 25883 Score = 25.4 bits (54), Expect = 6.7 Identities = 10/30 (33%), Positives = 13/30 (43%) Frame = +2 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAP 46 AA R + H R W+ +P PH P Sbjct: 286940 AASRRSPCRRRHTRPWRTFSRLPSQPHCQP 287029 >contig_16 Length = 698406 Score = 27.7 bits (60), Expect = 1.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 + PEHRRTW + +P R R+++R G GG Sbjct: 497871 VHPEHRRTWCLHSILGLHPRDQRR-------RHELR*GAGG 497770 >contig_32 Length = 1559911 Score = 27.3 bits (59), Expect = 1.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 19 DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDR 55 +R+R P HR T ++ ++PH P R N ND+ Sbjct: 102463 ERQRSRTPTHRTTKEYERKETEHPHQTP--RTNGNDK 102567 Score = 25.0 bits (53), Expect = 8.8 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 23 GIQPEHRRTWQFRGTIPQNPHLAPRF-RPNVNDRYQIRRGRG 63 G E + + + T+P++ L P R + DR+Q+R GRG Sbjct: 828551 GSPDEEKASGRQAATLPRHAALLPAVDRRHSADRHQVRCGRG 828426 >contig_30 Length = 1374157 Score = 27.3 bits (59), Expect = 1.8 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +2 Query: 32 WQFRGTIPQNPHL 44 WQ+RG PQ PHL Sbjct: 461627 WQYRGASPQQPHL 461665 Score = 26.9 bits (58), Expect = 2.3 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -3 Query: 29 RRTWQFRGTIP-QNPHLAPRFRPNV 52 RR WQ RGT P + P+ P RP + Sbjct: 134783 RRQWQVRGTRPAELPYRRPALRPQI 134709 Score = 26.6 bits (57), Expect = 3.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 23 GIQPEHRRTWQFRGTIPQNPH 43 G QP HRR W RG++ PH Sbjct: 509779 GAQPMHRRPW--RGSLHSRPH 509723 >contig_27 Length = 1024085 Score = 27.3 bits (59), Expect = 1.8 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 36 GTIPQNPHLAPRFRPNVNDRYQIRRG 61 GT + PHL P P++ + Q+RRG Sbjct: 833268 GTTNETPHLPPPLVPSLPSQSQLRRG 833345 >contig_14 Length = 645099 Score = 26.6 bits (57), Expect = 3.0 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -2 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 AA ++ P+ RR G +P + A +P + R RRGRGG Sbjct: 352097 AAGKDGVSPPQQRRA---AGVVPCHESAAANLQPRRHLRRAARRGRGG 351963 Score = 25.4 bits (54), Expect = 6.7 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -1 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPN 51 R RG+ P HR W R +P A F PN Sbjct: 592212 RRRGVAPAHRHLWVPR--LPLARDAAVSFHPN 592123 >contig_35 Length = 2113966 Score = 26.2 bits (56), Expect = 4.0 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = +3 Query: 28 HRRTWQFRGTIPQNPHLAP 46 HR +W F +P PH++P Sbjct: 381741 HRPSWSFAKNVPPFPHVSP 381797 >contig_17 Length = 671483 Score = 26.2 bits (56), Expect = 4.0 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 9/40 (22%) Frame = +1 Query: 36 GTIPQNPHLAPRFRPNVN---------DRYQIRRGRGGUC 66 GT+ NP L R RP D IRRGR G C Sbjct: 316885 GTVSHNPALENRLRPQKRWMW*AFIWFDLCLIRRGRVGSC 317004 >contig_29 Length = 1258350 Score = 25.8 bits (55), Expect = 5.2 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 17 AADRERGIQPEHRRTWQFRGT 37 ++DR G H+R WQ RGT Sbjct: 480586 SSDRAAGSGARHQRRWQARGT 480524 >contig_24 Length = 877124 Score = 25.4 bits (54), Expect = 6.7 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = +2 Query: 27 EHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGUC 66 +H + R +P PH A RF P + R GG C Sbjct: 3836 QHSSSNDPRRMLPVRPHGAARFPPPLQRELSHHRWYGGVC 3955 >contig_36 Length = 2713248 Score = 25.0 bits (53), Expect = 8.8 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 29 RRTWQFRGTIPQNPHLAPRFRP 50 RRTW ++GT P PR+ P Sbjct: 1329005 RRTWPWQGTCPGRRCCNPRWTP 1329070 >contig_34 Length = 1750858 Score = 25.0 bits (53), Expect = 8.8 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 6/20 (30%) Frame = +2 Query: 25 QPEHRRT------WQFRGTI 38 QP HRR WQFRGTI Sbjct: 173075 QPAHRRRPGQQIRWQFRGTI 173134 Score = 25.0 bits (53), Expect = 8.8 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = -2 Query: 23 GIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62 G+Q HRR W+ RGT + R P RRGR Sbjct: 1385538 GVQ-RHRREWE*RGTREHRTDHSGRIVPGCVASLPSRRGR 1385422 >contig_33 Length = 1453978 Score = 25.0 bits (53), Expect = 8.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = -3 Query: 29 RRTWQFRGTIPQNPHLA----PRFRPNVNDRYQ 57 RR R T+P H+A PRFRP+ R+Q Sbjct: 913814 RRRHV*RKTVPAAVHVALPPVPRFRPSSRTRFQ 913716 >contig_28 Length = 1171725 Score = 25.0 bits (53), Expect = 8.8 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 39 PQNPHLAPRFRPNVNDRYQIRRGR 62 P+ PH AP+ RP+ ++RR R Sbjct: 406989 PRQPHRAPQKRPHQGHCQRVRRHR 407060 >contig_26 Length = 1058259 Score = 25.0 bits (53), Expect = 8.8 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +2 Query: 26 PEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIR 59 P R + R +P PR PN R+Q+R Sbjct: 332225 PSSARLARRRSVSRSSPSFLPRLHPNPQHRFQLR 332326 Score = 25.0 bits (53), Expect = 8.8 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +1 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 A+ ERG + HRR W +P PH PR RRG GG Sbjct: 388543 ASGLERGSRRPHRRGWPHE-VLPYQPH-PPR-----------RRGGGG 388647 >contig_01 Length = 283432 Score = 25.0 bits (53), Expect = 8.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%) Frame = -1 Query: 42 PHLAPR------FRPNVNDRYQIRRGRGG 64 PH APR +RP N + Q RR RGG Sbjct: 208021 PHSAPRCGCRCCYRPRGNRQPQRRRRRGG 207935 Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa Posted date: Oct 4, 2011 6:44 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,198,679 Number of Sequences: 36 Number of extensions: 50901 Number of successful extensions: 666 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 581 Number of HSP's gapped (non-prelim): 265 length of query: 66 length of database: 10,814,999 effective HSP length: 41 effective length of query: 25 effective length of database: 10,813,523 effective search space: 270338075 effective search space used: 270338075 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (25.0 bits)