TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFNH01001668.1| Gregarina niphandrodes asmbl.2470, whole geno... 29 0.29 gb|AFNH01002912.1| Gregarina niphandrodes asmbl.3618, whole geno... 28 0.50 gb|AFNH01001714.1| Gregarina niphandrodes asmbl.2512, whole geno... 27 0.85 gb|AFNH01002531.1| Gregarina niphandrodes asmbl.3263, whole geno... 27 1.4 gb|AFNH01001985.1| Gregarina niphandrodes asmbl.2761, whole geno... 26 1.9 gb|AFNH01003460.1| Gregarina niphandrodes asmbl.799, whole genom... 25 3.2 gb|AFNH01001999.1| Gregarina niphandrodes asmbl.2774, whole geno... 25 3.2 gb|AFNH01001734.1| Gregarina niphandrodes asmbl.2532, whole geno... 25 3.2 gb|AFNH01002868.1| Gregarina niphandrodes asmbl.3579, whole geno... 25 5.5 gb|AFNH01002716.1| Gregarina niphandrodes asmbl.3435, whole geno... 25 5.5 gb|AFNH01002625.1| Gregarina niphandrodes asmbl.3350, whole geno... 25 5.5 gb|AFNH01002614.1| Gregarina niphandrodes asmbl.3340, whole geno... 25 5.5 gb|AFNH01002605.1| Gregarina niphandrodes asmbl.3330, whole geno... 25 5.5 gb|AFNH01002156.1| Gregarina niphandrodes asmbl.2918, whole geno... 25 5.5 gb|AFNH01002064.1| Gregarina niphandrodes asmbl.2835, whole geno... 25 5.5 gb|AFNH01003539.1| Gregarina niphandrodes asmbl.87, whole genome... 24 7.2 gb|AFNH01003239.1| Gregarina niphandrodes asmbl.6, whole genome ... 24 7.2 gb|AFNH01003208.1| Gregarina niphandrodes asmbl.571, whole genom... 24 7.2 gb|AFNH01003173.1| Gregarina niphandrodes asmbl.54, whole genome... 24 7.2 gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657, whole geno... 24 7.2 gb|AFNH01002661.1| Gregarina niphandrodes asmbl.3386, whole geno... 24 7.2 gb|AFNH01002416.1| Gregarina niphandrodes asmbl.3159, whole geno... 24 7.2 gb|AFNH01002093.1| Gregarina niphandrodes asmbl.2861, whole geno... 24 7.2 gb|AFNH01002083.1| Gregarina niphandrodes asmbl.2852, whole geno... 24 7.2 gb|AFNH01001649.1| Gregarina niphandrodes asmbl.2453, whole geno... 24 7.2 gb|AFNH01001042.1| Gregarina niphandrodes asmbl.1902, whole geno... 24 7.2 gb|AFNH01000596.1| Gregarina niphandrodes asmbl.1534, whole geno... 24 7.2 gb|AFNH01000542.1| Gregarina niphandrodes asmbl.1486, whole geno... 24 7.2 gb|AFNH01000335.1| Gregarina niphandrodes asmbl.13, whole genome... 24 7.2 gb|AFNH01000104.1| Gregarina niphandrodes asmbl.1091, whole geno... 24 7.2 gb|AFNH01003335.1| Gregarina niphandrodes asmbl.686, whole genom... 24 9.4 gb|AFNH01002692.1| Gregarina niphandrodes asmbl.3413, whole geno... 24 9.4 gb|AFNH01002384.1| Gregarina niphandrodes asmbl.313, whole genom... 24 9.4 >gb|AFNH01001668.1| Gregarina niphandrodes asmbl.2470, whole genome shotgun sequence Length = 8646 Score = 28.9 bits (63), Expect = 0.29 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -2 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 RG PE++ Q RGT P+ N Q+RRG GG Sbjct: 5069 RGTTPEYKSEVQLRGTTPR-----------YNSEVQLRRGGGG 4974 Score = 24.6 bits (52), Expect = 5.5 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%) Frame = -3 Query: 18 ADRERGIQ-PEHRRTWQFR--------GTIPQNPHLAPRFRPNVN 53 +DR R Q PEH+ T T+P NP + P RP+V+ Sbjct: 6322 SDRRRTYQLPEHQST*PVNIPSIDIPINTLPTNPFVRPSPRPSVD 6188 >gb|AFNH01002912.1| Gregarina niphandrodes asmbl.3618, whole genome shotgun sequence Length = 6877 Score = 28.1 bits (61), Expect = 0.50 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 47 RFRPNVNDRYQIRRGRGGUC 66 R RP+ DR Q RRGRG C Sbjct: 3761 RTRPSTQDRPQDRRGRGSRC 3820 >gb|AFNH01001714.1| Gregarina niphandrodes asmbl.2512, whole genome shotgun sequence Length = 28202 Score = 27.3 bits (59), Expect = 0.85 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Frame = -1 Query: 25 QPEHRRTW---QFRGTIPQNPHLAPRFRPNVND 54 +P TW G + Q PH PR RPN ND Sbjct: 19148 RPRPLDTWGANSTSGPLVQAPHPQPRVRPNPND 19050 >gb|AFNH01002531.1| Gregarina niphandrodes asmbl.3263, whole genome shotgun sequence Length = 6375 Score = 26.6 bits (57), Expect = 1.4 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = -2 Query: 19 DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 D +R + R TW +P+ P + RP N R+ RRG Sbjct: 3221 DSDRWARAGFRPTWLVHDLLPRRPSRDHQ*RPQRNARFIGRRG 3093 >gb|AFNH01001985.1| Gregarina niphandrodes asmbl.2761, whole genome shotgun sequence Length = 22116 Score = 26.2 bits (56), Expect = 1.9 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +2 Query: 23 GIQPEHRRTWQFRGTIPQNPHLAPRFRPN 51 G +P H R W+ I P + P RPN Sbjct: 7325 GSRP*HARPWKSLHQIRAGPKVCPALRPN 7411 >gb|AFNH01003460.1| Gregarina niphandrodes asmbl.799, whole genome shotgun sequence Length = 2349 Score = 25.4 bits (54), Expect = 3.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 35 RGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 RGT+P + + R+ ++ RY++RR R G Sbjct: 2236 RGTMPLSRRCSRRWTRSLRARYRLRRQRRG 2325 >gb|AFNH01001999.1| Gregarina niphandrodes asmbl.2774, whole genome shotgun sequence Length = 12576 Score = 25.4 bits (54), Expect = 3.2 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = -3 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVND 54 ERG QP+ WQ + +P FR ND Sbjct: 5275 ERGTQPDQLSRWQHQTALPTAKGETDAFRRPSND 5174 >gb|AFNH01001734.1| Gregarina niphandrodes asmbl.2532, whole genome shotgun sequence Length = 8621 Score = 25.4 bits (54), Expect = 3.2 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 19 DRERGIQPE-HRRTWQFRGTIPQNPHLAPRFRPNVNDR 55 D E +Q E RT +R +P L R+R N+NDR Sbjct: 3093 DLEDSLQAEGDLRTSSWRDCTVVDPRLRRRYRANLNDR 2980 >gb|AFNH01002868.1| Gregarina niphandrodes asmbl.3579, whole genome shotgun sequence Length = 7132 Score = 24.6 bits (52), Expect = 5.5 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +3 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRR 60 RTW G + Q PH +P D + +RR Sbjct: 2088 RTWNRTGNLGQRPHESP-LNTRPPDEFAVRR 2177 >gb|AFNH01002716.1| Gregarina niphandrodes asmbl.3435, whole genome shotgun sequence Length = 17065 Score = 24.6 bits (52), Expect = 5.5 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +2 Query: 25 QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62 QP+ +R Q+ ++ QNPH R +++R + GR Sbjct: 13865 QPQFQRRSQWCASLSQNPHFRHRRIGLISNRGEQHGGR 13978 >gb|AFNH01002625.1| Gregarina niphandrodes asmbl.3350, whole genome shotgun sequence Length = 20556 Score = 24.6 bits (52), Expect = 5.5 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 39 PQNPHLAPRFRPNVNDRYQI 58 P + HL P RP++ND Y + Sbjct: 12948 PSSDHLYPPTRPSLNDPYGV 12889 >gb|AFNH01002614.1| Gregarina niphandrodes asmbl.3340, whole genome shotgun sequence Length = 8763 Score = 24.6 bits (52), Expect = 5.5 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 7621 GFSPTCARCWQLAGGFPKNP 7680 >gb|AFNH01002605.1| Gregarina niphandrodes asmbl.3330, whole genome shotgun sequence Length = 9875 Score = 24.6 bits (52), Expect = 5.5 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 22 RGIQPEHRRTWQFR-----GTIPQNPHLAPRFRPNVNDR 55 R + P HR+TW R G+IP P + RP+ DR Sbjct: 7422 RSLSPNHRKTWGPRKCPSPGSIP--PRRSQSSRPHWWDR 7532 >gb|AFNH01002156.1| Gregarina niphandrodes asmbl.2918, whole genome shotgun sequence Length = 1701 Score = 24.6 bits (52), Expect = 5.5 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 764 GFSPACARCWQLAGGFPKNP 705 >gb|AFNH01002064.1| Gregarina niphandrodes asmbl.2835, whole genome shotgun sequence Length = 8827 Score = 24.6 bits (52), Expect = 5.5 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +2 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAP 46 + +PE R RGT P NP P Sbjct: 1976 KATEPEPREKQTIRGTHPSNPGFVP 2050 >gb|AFNH01003539.1| Gregarina niphandrodes asmbl.87, whole genome shotgun sequence Length = 1154 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -3 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 777 GCSPACARCWQLAGGFPKNP 718 >gb|AFNH01003239.1| Gregarina niphandrodes asmbl.6, whole genome shotgun sequence Length = 1061 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 904 GCSPACARCWQLAGGFPKNP 963 >gb|AFNH01003208.1| Gregarina niphandrodes asmbl.571, whole genome shotgun sequence Length = 1590 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 760 GCSPACARCWQLAGGFPKNP 819 >gb|AFNH01003173.1| Gregarina niphandrodes asmbl.54, whole genome shotgun sequence Length = 1628 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 712 GCSPACARRWQLAGGFPKNP 653 >gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657, whole genome shotgun sequence Length = 20249 Score = 24.3 bits (51), Expect = 7.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 R W+ +P P PRFR ++ + RRG GG Sbjct: 170 RVWRCFLCLPSPPFRRPRFRRSLG--LEWRRGLGG 72 >gb|AFNH01002661.1| Gregarina niphandrodes asmbl.3386, whole genome shotgun sequence Length = 9461 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 712 GCSPACARRWQLAGGFPKNP 771 >gb|AFNH01002416.1| Gregarina niphandrodes asmbl.3159, whole genome shotgun sequence Length = 20322 Score = 24.3 bits (51), Expect = 7.2 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -3 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 I+ H R W + PQ P R+R ++ + + +RGR G Sbjct: 15826 IRCTHSRVWTWSRRRPQMPPWFLRWRRSLTNAARGKRGRLG 15704 >gb|AFNH01002093.1| Gregarina niphandrodes asmbl.2861, whole genome shotgun sequence Length = 2667 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 2383 GCSPACARCWQLAGGFPKNP 2442 >gb|AFNH01002083.1| Gregarina niphandrodes asmbl.2852, whole genome shotgun sequence Length = 1566 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 1148 GCSPACARCWQLAGGFPKNP 1089 >gb|AFNH01001649.1| Gregarina niphandrodes asmbl.2453, whole genome shotgun sequence Length = 4994 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +2 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 248 GCSPACARCWQLAGGFPKNP 307 >gb|AFNH01001042.1| Gregarina niphandrodes asmbl.1902, whole genome shotgun sequence Length = 1323 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +2 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 866 GCSPACARRWQLAGGFPKNP 925 >gb|AFNH01000596.1| Gregarina niphandrodes asmbl.1534, whole genome shotgun sequence Length = 1405 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 940 GCSPACARCWQLAGGFPKNP 881 >gb|AFNH01000542.1| Gregarina niphandrodes asmbl.1486, whole genome shotgun sequence Length = 1242 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 217 GCSPACARCWQLAGGFPKNP 276 >gb|AFNH01000335.1| Gregarina niphandrodes asmbl.13, whole genome shotgun sequence Length = 1492 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -3 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 935 GCSPACARRWQLTGGFPKNP 876 >gb|AFNH01000104.1| Gregarina niphandrodes asmbl.1091, whole genome shotgun sequence Length = 1299 Score = 24.3 bits (51), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R WQ G P+NP Sbjct: 102 GCSPACARRWQLTGGFPKNP 43 >gb|AFNH01003335.1| Gregarina niphandrodes asmbl.686, whole genome shotgun sequence Length = 3427 Score = 23.9 bits (50), Expect = 9.4 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -2 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 R +FRGT+ + LAP + DR +G G Sbjct: 3330 RLRRFRGTLAETTTLAPASSSSSGDRTASGKGSSG 3226 >gb|AFNH01002692.1| Gregarina niphandrodes asmbl.3413, whole genome shotgun sequence Length = 21988 Score = 23.9 bits (50), Expect = 9.4 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Frame = +2 Query: 17 AADRERGIQPEHRRTW-------QFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 A R+ G RR W + IPQ P P V R + GRGG Sbjct: 7952 ACSRQGGAFKALRRRWVCAAHVCEMSEPIPQRPRALRPPLPGVGIRSSVPDGRGG 8116 >gb|AFNH01002384.1| Gregarina niphandrodes asmbl.313, whole genome shotgun sequence Length = 1212 Score = 23.9 bits (50), Expect = 9.4 Identities = 8/20 (40%), Positives = 10/20 (50%) Frame = +1 Query: 23 GIQPEHRRTWQFRGTIPQNP 42 G P R W+ G P+NP Sbjct: 304 GCSPARARCWRLAGGFPKNP 363 Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa Posted date: Sep 29, 2011 11:25 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,354,233 Number of Sequences: 3680 Number of extensions: 19522 Number of successful extensions: 287 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 283 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 287 length of query: 66 length of database: 5,120,956 effective HSP length: 40 effective length of query: 26 effective length of database: 4,973,756 effective search space: 129317656 effective search space used: 129317656 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.9 bits)