TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_46                                                            32   0.23 
scaffold_6                                                             32   0.23 
scaffold_71                                                            30   0.52 
scaffold_1                                                             28   2.0  

>scaffold_46 
          Length = 481344

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 25     QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
              +P  RR W    T   NPHL   FRP   ++Y++R+ R
Sbjct: 191328 RPLIRRFWPVTSTDDTNPHLV--FRPREKEKYKLRKKR 191435



 Score = 28.9 bits (63), Expect = 1.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 25     QPEHRRTWQFRGTIPQNPH 43
              Q E RRTW F G IP+N H
Sbjct: 458925 Q*ECRRTWNFHGRIPRNYH 458981


>scaffold_6 
          Length = 2967614

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 25      QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
               +P  RR W    T   NPHL   FRP   ++Y++R+ R
Sbjct: 1971800 RPLIRRFWPVTSTDDTNPHLV--FRPREKEKYKLRKKR 1971907


>scaffold_71 
          Length = 263701

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 39     PQNPHLAPRFRPNVNDRYQIRRGRGGUC 66
              P+ PH+A  +  +++ RY++RR R G C
Sbjct: 212043 PKKPHIATTWDLSLDHRYRLRRSRHGTC 211960


>scaffold_1 
          Length = 5926375

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 39      PQNPHLAPRFRPNVNDRYQIRRGRGGUC 66
               P+ PH+A     +++ RY++RR R G C
Sbjct: 3974383 PKKPHIATT*DLSLDHRYRLRRSRHGTC 3974300


  Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa
    Posted date:  Sep 29, 2011 10:40 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,493,673
Number of Sequences: 271
Number of extensions: 44931
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 39
length of query: 66
length of database: 26,846,802
effective HSP length: 41
effective length of query: 25
effective length of database: 26,835,691
effective search space: 670892275
effective search space used: 670892275
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)