TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaff...    27   2.9  

>gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5,
               whole genome shotgun sequence
          Length = 3468650

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 20      RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRY 56
               RE  ++ +H++ +QF GT+    HL       V+ RY
Sbjct: 2446949 RELQLRLDHQQEYQFHGTLHSKYHLQQAHSSQVHLRY 2447059


  Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa
    Posted date:  Sep 29, 2011 10:07 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,633,081
Number of Sequences: 25
Number of extensions: 15577
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 10,339,736
effective HSP length: 41
effective length of query: 25
effective length of database: 10,338,711
effective search space: 258467775
effective search space used: 258467775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)