TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole ...    25   7.1  
gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole ...    25   9.2  

>gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence
          Length = 8484197

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 43      HLAPRFRPNVNDRY 56
               HL  ++ PNVNDRY
Sbjct: 6709177 HLIKKYLPNVNDRY 6709136


>gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence
          Length = 6357299

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 25      QPEHRRTWQFRGTIPQNPHLAPRFRPNVN 53
               QP+H++       +PQ+P L P    ++N
Sbjct: 2482197 QPQHQQLHSSPQQLPQSPRLKPNIESSLN 2482111


  Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa
    Posted date:  Sep 29, 2011  8:31 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,156,667
Number of Sequences: 6
Number of extensions: 8059
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 14
length of query: 66
length of database: 11,314,357
effective HSP length: 41
effective length of query: 25
effective length of database: 11,314,111
effective search space: 282852775
effective search space used: 282852775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)