TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig891 | | 1 to 103530 31 0.18 Cf_Contig611 | | 1 to 29350 27 2.0 Cf_Contig1023 | | 1 to 181863 27 2.6 Cf_Contig1021 | | 1 to 127640 27 3.4 Cf_Contig903 | | 1 to 108483 27 3.4 Cf_Contig765 | | 1 to 162644 27 3.4 Cf_Contig1035 | | 1 to 245267 26 4.5 Cf_Contig885 | | 1 to 124534 26 4.5 Cf_Contig992 | | 1 to 103020 26 5.9 Cf_Contig896 | | 1 to 63591 26 5.9 Cf_Contig1071 | | 1 to 673414 25 7.7 Cf_Contig1068 | | 1 to 155071 25 7.7 Cf_Contig999 | | 1 to 119337 25 7.7 Cf_Contig974 | | 1 to 108782 25 7.7 Cf_Contig668 | | 1 to 37616 25 7.7 >Cf_Contig891 | | 1 to 103530 Length = 103530 Score = 30.8 bits (68), Expect = 0.18 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +2 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGUC 66 AA+RE G +P+ RRT ++PQ PRF + + R+ + R C Sbjct: 100172 AAEREGGSEPQRRRTELLATSLPQ-----PRFTSHNSFRFALHLSRSFRC 100306 >Cf_Contig611 | | 1 to 29350 Length = 29350 Score = 27.3 bits (59), Expect = 2.0 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPRF 48 AADR Q RR W+ RG +P H PR+ Sbjct: 12857 AADR----QTLRRRWWRLRGRLPSAAHSQPRW 12774 >Cf_Contig1023 | | 1 to 181863 Length = 181863 Score = 26.9 bits (58), Expect = 2.6 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 17 AADRERGIQPEHRRTWQFRGTIPQNPHLAPR 47 AAD ERG+ P+ R Q R P++PH+A R Sbjct: 139876 AADGERGVLPQRR---QLRP--PRSPHIAAR 139953 >Cf_Contig1021 | | 1 to 127640 Length = 127640 Score = 26.6 bits (57), Expect = 3.4 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Frame = -2 Query: 20 RERGIQPEHRRTWQFRGTIPQ---NPH--LAPRFRPNVNDRYQIRRGRGG 64 R+RG+ + R+ WQ RG P PH LA R R D + R G Sbjct: 7012 RQRGVVRQQRQAWQ-RGAAPDELPRPHHLLAVRRRAAARDSHPARAADAG 6866 >Cf_Contig903 | | 1 to 108483 Length = 108483 Score = 26.6 bits (57), Expect = 3.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPR 47 R P+ RRT Q R +P P APR Sbjct: 43927 RNRSPDERRTQQLRSCLPHLPLRAPR 44004 Score = 25.8 bits (55), Expect = 5.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 35 RGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 RG +PH A RP+ + R RRGR G Sbjct: 92034 RGADACSPHSAGSARPHHHPRSTARRGRSG 91945 >Cf_Contig765 | | 1 to 162644 Length = 162644 Score = 26.6 bits (57), Expect = 3.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -3 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 +R I P R+T + R P NP +PR P+ R RRG Sbjct: 135054 QRQIPPRPRQTSRSR---PSNPQKSPRATPSPAQRTP*RRG 134941 >Cf_Contig1035 | | 1 to 245267 Length = 245267 Score = 26.2 bits (56), Expect = 4.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 42 PHLAPRFRPNVNDRYQIRRGRGG 64 PHLAP R + R + RRG GG Sbjct: 18207 PHLAPLRRRQQHRRVEPRRGEGG 18139 >Cf_Contig885 | | 1 to 124534 Length = 124534 Score = 26.2 bits (56), Expect = 4.5 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 49 RPNVNDRYQIRRGRGG 64 R N+N R++ RRGRGG Sbjct: 66232 RSNINARHKSRRGRGG 66279 >Cf_Contig992 | | 1 to 103020 Length = 103020 Score = 25.8 bits (55), Expect = 5.9 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 33 QFRGTIPQNPHLAPRFRPNVNDR 55 Q G + + PHLAP F P V R Sbjct: 80811 QLLGEVWRRPHLAPPFHPKVVQR 80743 >Cf_Contig896 | | 1 to 63591 Length = 63591 Score = 25.8 bits (55), Expect = 5.9 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 42 PHLAPRFRPNVNDRYQIRRGRGG 64 PHLAP R + R + RRG GG Sbjct: 1817 PHLAPLRRRQQHRRAEPRRGEGG 1885 >Cf_Contig1071 | | 1 to 673414 Length = 673414 Score = 25.4 bits (54), Expect = 7.7 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%) Frame = +2 Query: 25 QPEHR----RTWQFRGTIPQNP-HLAPRFRPNVND 54 QP+ R R WQ R P NP L PR R + +D Sbjct: 566102 QPQRRAWWLRCWQLRAPPPANPVPLRPRRRTDAHD 566206 >Cf_Contig1068 | | 1 to 155071 Length = 155071 Score = 25.4 bits (54), Expect = 7.7 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Frame = -3 Query: 19 DRERGIQPEHRRT--WQFRGTIPQNPHLAPRFR---------PNVNDRYQIRRGRGG 64 DR G+Q +H W+ R + + P L + R PN+ R +RR RGG Sbjct: 41948 DRFTGVQRQHGCV*GWRARHCVWRPPTLLGQRR*QRVRQLQDPNLRSRADLRRPRGG 41778 >Cf_Contig999 | | 1 to 119337 Length = 119337 Score = 25.4 bits (54), Expect = 7.7 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -1 Query: 21 ERGIQPEHRRTWQFRG 36 ERG P+ RR WQ RG Sbjct: 37836 ERGEAPQRRRKWQRRG 37789 >Cf_Contig974 | | 1 to 108782 Length = 108782 Score = 25.4 bits (54), Expect = 7.7 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +1 Query: 21 ERGIQPEHRRTWQF 34 ERG PEH TWQF Sbjct: 60127 ERGEVPEHCSTWQF 60168 >Cf_Contig668 | | 1 to 37616 Length = 37616 Score = 25.4 bits (54), Expect = 7.7 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -2 Query: 20 RERGIQPEHRRTWQF-RGTIPQNPHLAPRF 48 RE+GI EHRR Q GT P P L+P F Sbjct: 11518 REKGIHCEHRRALQA*EGTEP--PSLSPIF 11435 Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa Posted date: Sep 29, 2011 8:09 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,407,770 Number of Sequences: 1089 Number of extensions: 54894 Number of successful extensions: 678 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 192 Number of HSP's successfully gapped in prelim test: 36 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 439 length of query: 66 length of database: 12,349,441 effective HSP length: 41 effective length of query: 25 effective length of database: 12,304,792 effective search space: 307619800 effective search space used: 307619800 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (25.0 bits)