TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADNL01000518.1| Astrammina rara contig00579, whole genome sho...    22   2.5  
gb|ADNL01000044.1| Astrammina rara contig00047, whole genome sho...    22   2.5  
gb|ADNL01000178.1| Astrammina rara contig00188, whole genome sho...    22   3.3  
gb|ADNL01000170.1| Astrammina rara contig00177, whole genome sho...    22   3.3  
gb|ADNL01000165.1| Astrammina rara contig00172, whole genome sho...    21   5.6  
gb|ADNL01002603.1| Astrammina rara contig03080, whole genome sho...    20   9.6  

>gb|ADNL01000518.1| Astrammina rara contig00579, whole genome shotgun sequence
          Length = 1533

 Score = 22.3 bits (46), Expect = 2.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 31  TWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61
           TW   G++ +NP      +P++  R + R G
Sbjct: 170 TWMMEGSLGENPRPIKLLKPSILFRPKPRIG 262


>gb|ADNL01000044.1| Astrammina rara contig00047, whole genome shotgun sequence
          Length = 737

 Score = 22.3 bits (46), Expect = 2.5
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 30  RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
           R W F G         PR R N  DR+   RGR
Sbjct: 516 RRWAFVGA-------DPRLRANSGDRHSKCRGR 439


>gb|ADNL01000178.1| Astrammina rara contig00188, whole genome shotgun sequence
          Length = 2971

 Score = 21.9 bits (45), Expect = 3.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -1

Query: 24   IQPEHRRTWQFRGTIPQNPHLAPRFRPNVN 53
            ++  ++  W F  T+ Q+P+L       +N
Sbjct: 2767 VEDRNQSWWTFTDTVEQSPNLEDHLNDLIN 2678


>gb|ADNL01000170.1| Astrammina rara contig00177, whole genome shotgun sequence
          Length = 1077

 Score = 21.9 bits (45), Expect = 3.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 20  RERGIQPEHRRTWQ 33
           R  G +P H R WQ
Sbjct: 491 RRNGCRPVHHRVWQ 450


>gb|ADNL01000165.1| Astrammina rara contig00172, whole genome shotgun sequence
          Length = 222

 Score = 21.2 bits (43), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 47  RFRPNVNDRYQIRRGRGG 64
           +FRP    RY+IRR   G
Sbjct: 101 KFRPYSGRRYRIRRCSSG 48


>gb|ADNL01002603.1| Astrammina rara contig03080, whole genome shotgun sequence
          Length = 8271

 Score = 20.4 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 26   PEHRRTWQFRGTIPQNPHL 44
            P+H R    + T+ Q PHL
Sbjct: 7039 PKHVRVKLNKNTVCQTPHL 7095


  Database: /users/rg/didac/GENOMES/A.rara/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,171
Number of Sequences: 3231
Number of extensions: 885
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 483,365
effective HSP length: 34
effective length of query: 32
effective length of database: 373,511
effective search space: 11952352
effective search space used: 11952352
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 41 (20.4 bits)