TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824416.1| Albugo laibachii Nc14, genomic contig CONTIG_372...    28   1.4  
emb|FR824527.1| Albugo laibachii Nc14, genomic contig CONTIG_488...    26   5.1  
emb|FR824353.1| Albugo laibachii Nc14, genomic contig CONTIG_308...    25   8.8  

>emb|FR824416.1| Albugo laibachii Nc14, genomic contig CONTIG_372_NC14_v4_23297_229
          Length = 23297

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 25   QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
            +P  R+ W        NPHL   FRP   +RY++R+ R
Sbjct: 4135 RPILRKYWPQTPLNDTNPHLV--FRPREKERYKLRKHR 4242


>emb|FR824527.1| Albugo laibachii Nc14, genomic contig CONTIG_488_NC14_v4_13996_222
          Length = 13996

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 24   IQPEHRRTWQFRGTIPQNPHLAPRFRPNV 52
            I P       FRGTIP  P+LA R  P++
Sbjct: 3196 INPIRYSVNSFRGTIPFCPNLALRVSPDI 3282


>emb|FR824353.1| Albugo laibachii Nc14, genomic contig CONTIG_308_NC14_v4_30831_242
          Length = 30831

 Score = 25.0 bits (53), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 32    WQFRGTIPQNPHLAPRF 48
             + F+ T P++PHL P F
Sbjct: 19264 YTFQATFPKDPHLLPHF 19314


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,074,244
Number of Sequences: 3816
Number of extensions: 21884
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of query: 66
length of database: 10,913,379
effective HSP length: 41
effective length of query: 25
effective length of database: 10,756,923
effective search space: 268923075
effective search space used: 268923075
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)