TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.11 43 8e-05 T.congo.pschr.8 30 0.56 TcIL3000_10_v2.embl 28 2.8 T. 27 6.2 >T.congo.pschr.11 Length = 4797796 Score = 43.1 bits (100), Expect = 8e-05 Identities = 21/62 (33%), Positives = 35/62 (56%) Frame = +1 Query: 123 VLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAK 182 V +A Y + V+ ++ GG R +GA LGA++G+ IP W S T + S++ +A Sbjct: 3344839 VQSARTYAEGVKASIRLGGPVSQRSLIVGALLGARMGVRRIPIRWLSATPDHVSLVTYAL 3345018 Query: 183 KI 184 +I Sbjct: 3345019 QI 3345024 Score = 30.0 bits (66), Expect = 0.73 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +1 Query: 130 VQAVRDTMSCGGCTCSR-GSFIGACLGA 156 + AV ++ GGC+CSR G F+G +GA Sbjct: 4673128 MSAVTTSLQGGGCSCSRGGKFVGRSIGA 4673211 Score = 28.5 bits (62), Expect = 2.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 98 PQELIPAVFVNTUGLPGAFQAALHGVLTATN 128 PQ+ PAVF G+ A + A+H V A N Sbjct: 75764 PQDAAPAVFSYRAGINSAHEGAIHTVAVAPN 75672 >T.congo.pschr.8 Length = 2451971 Score = 30.4 bits (67), Expect = 0.56 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQV 158 R ++SCGGCT + SF+ C+ V Sbjct: 1791316 RSSLSCGGCTYANVSFVAICICVSV 1791390 >TcIL3000_10_v2.embl Length = 3612457 Score = 28.1 bits (61), Expect = 2.8 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = -2 Query: 122 GVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGA---QVGLEGIPASWSSRT 171 G T N V + +C G C R F G+ GA Q+GL +P + RT Sbjct: 2897094 GADTRRNIVSLLPCNYNCTGTNCPRCFFCGSAAGAFLSQMGL*FVPFALGRRT 2896936 Score = 26.6 bits (57), Expect = 8.1 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +1 Query: 122 GVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQ 172 G+L + N+ AV +CG T S ++G L GL IPA W Q Sbjct: 474961 GLLESLNFPSAVPGDFTCGN-TSSARLYLGVVLLGATGL-FIPAVWEEWLQ 475107 >T. Length = 839999 Score = 26.9 bits (58), Expect = 6.2 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -1 Query: 111 GLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIG-ACLGAQVGLEGIPA 165 GLP A A GV+ V +VR+ + GGC F+G +G VG GI A Sbjct: 40874 GLPLA--ARERGVVRRRRSVFSVREAVRGGGCVPCPFRFLGVGGMGKSVGWRGIEA 40713 Database: /users/rg/didac/GENOMES/T.congolense/genome.fa Posted date: Sep 29, 2011 4:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,077,364 Number of Sequences: 11 Number of extensions: 79871 Number of successful extensions: 418 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 332 Number of HSP's gapped (non-prelim): 232 length of query: 189 length of database: 7,429,315 effective HSP length: 92 effective length of query: 97 effective length of database: 7,428,303 effective search space: 720545391 effective search space used: 720545391 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)