TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: /users/rg/didac/GENOMES/S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.407 of Sphaeroforma arctica JP610                           31   2.0  
supercont1.143 of Sphaeroforma arctica JP610                           30   2.6  
supercont1.2659 of Sphaeroforma arctica JP610                          28   9.9  
supercont1.948 of Sphaeroforma arctica JP610                           28   9.9  

>supercont1.407 of Sphaeroforma arctica JP610
          Length = 77155

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 120   LHGVLTA--TNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESV 177
             +HG  T     YV  V     CGGC  S  S  G+C G   G+    A  + R + +ESV
Sbjct: 70663 IHGRRTGWGVGYVT*VWGA**CGGCQVSEESGGGSCEGEAGGIASQGADDAIRARMFESV 70484

Query: 178   L 178
             L
Sbjct: 70483 L 70481


>supercont1.143 of Sphaeroforma arctica JP610
          Length = 134398

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 133   VRDTMSCG-GCTCSRGSFIGACLGAQVGLEG 162
             +R   SCG GC C  GS  GAC G   G  G
Sbjct: 39590 IRYGCSCGRGCGCGAGSLCGACAGVLGGCMG 39682


>supercont1.2659 of Sphaeroforma arctica JP610
          Length = 5350

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 62   ESVIRQL-RDPNRKQAQDLDQAVVGHIHQ 89
            ES+ RQL RDPNR     L   VV HIH+
Sbjct: 1062 ESIARQLNRDPNRVSIPQLVIKVVTHIHR 976


>supercont1.948 of Sphaeroforma arctica JP610
          Length = 29395

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -1

Query: 128 NYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSH 187
           N+ + VR T+S   C C      G C G     EGI    S R + Y ++   + KI  H
Sbjct: 703 NHRRCVR-TLSVSECCC------GGCGGCTNEYEGIAGQDSRRIETYHNIQHISPKIVWH 545

Query: 188 LQ 189
           ++
Sbjct: 544 MK 539


  Database: /users/rg/didac/GENOMES/S.arctica/genome.fa
    Posted date:  Sep 29, 2011  6:14 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,645,670
Number of Sequences: 15618
Number of extensions: 379508
Number of successful extensions: 1702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 1435
length of query: 189
length of database: 40,529,447
effective HSP length: 103
effective length of query: 86
effective length of database: 38,920,793
effective search space: 3347188198
effective search space used: 3347188198
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)