TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig37284 655 655                                                    30   8.1  

>Contig37284 655 655
          Length = 655

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 133 VRDTMSCGGCTCSRGSFIGACLGAQVGLEG 162
           VRD     GC C RG   G C+G+ +G  G
Sbjct: 488 VRDGRGGVGCGCVRGGIGGGCVGSVIGSVG 399


  Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa
    Posted date:  Sep 30, 2011 12:44 AM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,449,613
Number of Sequences: 297657
Number of extensions: 817889
Number of successful extensions: 4920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4908
length of query: 189
length of database: 106,339,350
effective HSP length: 107
effective length of query: 82
effective length of database: 74,490,051
effective search space: 6108184182
effective search space used: 6108184182
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)