TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_49                                                       80   1e-15
PHYCAscaffold_2                                                        65   5e-11
PHYCAscaffold_281                                                      30   1.5  
PHYCAscaffold_72                                                       30   1.5  
PHYCAscaffold_25                                                       30   2.5  
PHYCAscaffold_33                                                       29   4.3  
PHYCAscaffold_6                                                        29   4.3  
PHYCAscaffold_38                                                       28   7.4  
PHYCAscaffold_11                                                       28   7.4  
PHYCAscaffold_8                                                        28   7.4  
PHYCAscaffold_28                                                       28   9.6  
PHYCAscaffold_15                                                       28   9.6  

>PHYCAscaffold_49 
          Length = 508508

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 59/184 (32%), Positives = 83/184 (45%)
 Frame = +1

Query: 1     MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60
             +D ++ +  VVA YAG  ++  +V++ V+V           L AA  LE  IL       
Sbjct: 75571 IDVLSLIPIVVALYAGTNQLFTKVDELVKVFYVGTRVRDAALVAAFVLEQVILGA----- 75735

Query: 61    LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAAL 120
               SV++ +R   R +   + Q  V      K  L   P       F N   LPG F A L
Sbjct: 75736 --SVLQAMRMSIRTERLSVKQRKVIFKAFTKSQL---PSYEAIQKFGNRGSLPGGFHAVL 75900

Query: 121   HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180
               +    +Y  AVR+ +  GG TC R  FIGAC  AQ GLE IP  W  +TQ ++ +   
Sbjct: 75901 QPLFVLNDYPTAVRENIIGGGRTCRRAMFIGACFAAQDGLEVIPEGWIQKTQYFDFIEAD 76080

Query: 181   AKKI 184
             A  +
Sbjct: 76081 ASSL 76092


>PHYCAscaffold_2 
          Length = 1925921

 Score = 65.1 bits (157), Expect = 5e-11
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 3/187 (1%)
 Frame = +1

Query: 1       MDGVTKLAPVVAFYAGKPEML-GRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPT 59
               + G  K   +VA Y    E+L  +  +A  V +         +A A  L+  +       
Sbjct: 1859425 LHGGIKTPILVAQYFEDTELLLQKTREATAVHEIGAEAENAAVATALLLQQVVQG----V 1859592

Query: 60      ALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAV--FVNTUGLPGAFQ 117
                +E+ IR+L   N   + D   +V   I  V++   KT  +   AV  F     LPG  Q
Sbjct: 1859593 TVEAAIRKLTS-NEAISSDTRASVQQAIDAVED---KTFPDATSAVAHFGKPCSLPGVLQ 1859760

Query: 118     AALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESV 177
                ++  +LT++ Y +A+R  M  GG  CSR   IGA + A  G + IPA W  +T+ Y SV
Sbjct: 1859761 GSVFVLLTSSGYEEALRANMVAGGDNCSRAIVIGAVIAAARGSDVIPAEWKHKTKVYSSV 1859940

Query: 178     LEHAKKI 184
                  A+KI
Sbjct: 1859941 QALAEKI 1859961


>PHYCAscaffold_281 
          Length = 6816

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 57  DPTALESVIRQLRDPNRKQAQDLDQAVV 84
           D T L SVI +  DP+R +A+D DQA V
Sbjct: 798 DGTGLASVIMEPEDPDRAEAEDPDQAGV 715


>PHYCAscaffold_72 
          Length = 230452

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 57     DPTALESVIRQLRDPNRKQAQDLDQA 82
              D T L SVI +  DP+R +A+D DQA
Sbjct: 225110 DGTGLASVIMEPEDPDRSEAEDPDQA 225187


>PHYCAscaffold_25 
          Length = 841216

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 61     LESVIRQLRDPNRKQAQDLDQAVVGHIHQ 89
              L+SV   LR+  R QA   DQ VVGH H+
Sbjct: 672513 LQSVATSLREAERVQANLGDQGVVGHHHR 672427


>PHYCAscaffold_33 
          Length = 640966

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 142    CTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSHLQ 189
              CTCSR S+ G C  A       P S SSR++      E A K T+ L+
Sbjct: 123996 CTCSRASYWGLCSAAYSA--STPVSSSSRSE------EDAGKTTARLR 123877


>PHYCAscaffold_6 
          Length = 1423605

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 61     LESVIRQLRDPNRKQAQDLDQAVVGHIHQ--VKENL 94
              L SV   LR+  R QA   DQ VVGH H+   KE L
Sbjct: 938749 LPSVATSLREAERVQADLGDQGVVGHHHRTGAKERL 938642


>PHYCAscaffold_38 
          Length = 550336

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 114   GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVG 159
             GAF  A  GV    +    V +  S G C    G+ +GAC+GA VG
Sbjct: 59350 GAFVGASVGVTVGVSVGACVGE--SVGACV---GASVGACVGASVG 59228


>PHYCAscaffold_11 
          Length = 1076090

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 109    TUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCS 145
              T   PG F  +L G  T ++ V+   +T  C G TCS
Sbjct: 271092 TQAAPGFFYVSLLGFSTKSSTVKFRVETSKCRGVTCS 271202


>PHYCAscaffold_8 
          Length = 1194346

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 5/115 (4%)
 Frame = -3

Query: 63     SVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAALHG 122
              S+ R+ R P + +A  L +    H   ++  L   P    PA  +    LP  FQA  H 
Sbjct: 202226 SIKRRRRRPGQNRAVQLLEQYYRHA-AIRTGLCHHPGSCTPAGSL----LPKVFQAPAHH 202062

Query: 123    VLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGL-----EGIPASWSSRTQ 172
               +    Y +    +    G TC     +  C G  V         +PA  S+ TQ
Sbjct: 202061 RVPGYRYYRGAVCS*PSNGGTCGYALELRECFGVVVHFLSSWPRDLPARSSTTTQ 201897


>PHYCAscaffold_28 
          Length = 757753

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -2

Query: 54     NGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLP 113
              +G D  +L +  RQ +DP +    D  +    H+HQV E L +    L         GL 
Sbjct: 665601 SGSDCVSLSA--RQTQDPKQCVRSDGVKRTENHLHQVHERLRRHGDGL------GALGLQ 665446

Query: 114    GAFQAALHG 122
              G     LHG
Sbjct: 665445 GVGGLGLHG 665419


>PHYCAscaffold_15 
          Length = 1032281

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 142    CTCSRGSFIGACLGAQVGLEGIPASWS 168
              CTCS  SF+ AC   ++ L  I   WS
Sbjct: 808867 CTCSTSSFLVACCSLRMRLSFIIKFWS 808787


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,697,106
Number of Sequences: 917
Number of extensions: 229882
Number of successful extensions: 1424
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 837
length of query: 189
length of database: 21,341,249
effective HSP length: 99
effective length of query: 90
effective length of database: 21,250,466
effective search space: 1912541940
effective search space used: 1912541940
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)