TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6500 | | 1 to 12420 44 6e-05 Lt_contig6025 | | 1 to 17907 35 0.038 Lt_contig1291 | | 1 to 3148 32 0.33 Lt_contig6485 | | 1 to 10157 31 0.56 Lt_contig492 | | 1 to 7407 30 1.2 Lt_contig6649 | | 1 to 7929 29 1.6 Lt_contig523 | | 1 to 7155 29 1.6 Lt_contig6944 | | 1 to 9032 28 2.8 Lt_contig3765 | | 1 to 2847 28 3.6 Lt_contig5283 | | 1 to 14167 28 4.7 Lt_contig5256 | | 1 to 6710 28 4.7 Lt_contig1358 | | 1 to 9826 28 4.7 Lt_contig7192 | | 1 to 11355 28 4.7 Lt_contig3516 | | 1 to 1163 28 4.7 Lt_contig6330 | | 1 to 18716 28 4.7 Lt_contig5320 | | 1 to 3736 27 6.1 Lt_contig1166 | | 1 to 10792 27 6.1 Lt_contig6673 | | 1 to 7833 27 6.1 Lt_contig6404 | | 1 to 2714 27 6.1 Lt_contig6012 | | 1 to 12168 27 8.0 >Lt_contig6500 | | 1 to 12420 Length = 12420 Score = 43.9 bits (102), Expect = 6e-05 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +1 Query: 129 YVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184 + Q V + GG TC R +GA LGA++G+ IP W S T ++ V A ++ Sbjct: 1807 FAQGVAQAIRLGGPTCQRAMLVGALLGAKLGVRQIPVEWLSATADHKPVSTMALEV 1974 >Lt_contig6025 | | 1 to 17907 Length = 17907 Score = 34.7 bits (78), Expect = 0.038 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Frame = +1 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVK--ENLSKTPQELIPAVF 106 + S + L +P +++A DL A H+H+ K + +S+TP E++ ++F Sbjct: 2293 ISSAYQVLSNPEKRKAYDLGGAQAVHLHETKFGKFMSRTPSEIVQSIF 2436 >Lt_contig1291 | | 1 to 3148 Length = 3148 Score = 31.6 bits (70), Expect = 0.33 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -1 Query: 131 QAVRDTMSCGGCTCSRGSFIGACLGAQVG---LEGIPASWSSRTQR 173 QAVRD GC C R + ACLG G LE A+W S ++ Sbjct: 2221 QAVRDPQE--GCRCWRQRMVPACLGCAPGSASLERFGAAWCSSPKK 2090 >Lt_contig6485 | | 1 to 10157 Length = 10157 Score = 30.8 bits (68), Expect = 0.56 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Frame = +3 Query: 89 QVKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTC---- 144 Q + + TP+ L+PA+F++ L +F A + + +Q T +C CTC Sbjct: 447 QAQGDSGSTPRPLLPAIFLSFMCLTRSFFVARRLCIPIKHQIQIYTHTHTC-TCTCLQSH 623 Query: 145 -------SRGSFIGACL 154 S GSF +CL Sbjct: 624 EGGATRNSPGSFSLSCL 674 >Lt_contig492 | | 1 to 7407 Length = 7407 Score = 29.6 bits (65), Expect = 1.2 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +2 Query: 126 ATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPAS 166 AT+ V+AVR +SCGGC C + + CL +G P S Sbjct: 1151 ATSAVRAVR--ISCGGCPCFSFAGLCRCLYRTLGSTSSPFS 1267 >Lt_contig6649 | | 1 to 7929 Length = 7929 Score = 29.3 bits (64), Expect = 1.6 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +2 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGCTCS-RG--SFIGAC 153 F A+L V+T++ V+ + TMS C CS RG +F G+C Sbjct: 3950 FSASLTSVVTSSERVRTISSTMSRLSCCCSVRGVRAFEGSC 4072 >Lt_contig523 | | 1 to 7155 Length = 7155 Score = 29.3 bits (64), Expect = 1.6 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 10/45 (22%) Frame = +1 Query: 139 CGGCTCSR----------GSFIGACLGAQVGLEGIPASWSSRTQR 173 CGG C R G+FI + VG+ PASW R+ R Sbjct: 5398 CGGVLCPRVLCKGGGGEMGNFIAFTIHVHVGILESPASWLQRSAR 5532 >Lt_contig6944 | | 1 to 9032 Length = 9032 Score = 28.5 bits (62), Expect = 2.8 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIP 164 CGGC+CS G+ C VG P Sbjct: 1298 CGGCSCSVGTIGALCCNVSVGPRSHP 1221 >Lt_contig3765 | | 1 to 2847 Length = 2847 Score = 28.1 bits (61), Expect = 3.6 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 117 QAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLG 155 +AAL L +++Q R + CG C RG G C G Sbjct: 1270 RAALRDPLWQRHFLQRARPVLLCGMCAPLRGGG*GMCSG 1154 >Lt_contig5283 | | 1 to 14167 Length = 14167 Score = 27.7 bits (60), Expect = 4.7 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = +2 Query: 92 ENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIG 151 + + P++ +PA + T G +AALHG T Y A T TC RG+ G Sbjct: 1694 QTAAAAPEKKLPASW*ATAGS----RAALHGASTPPRYAPATAST------TCKRGNSEG 1843 >Lt_contig5256 | | 1 to 6710 Length = 6710 Score = 27.7 bits (60), Expect = 4.7 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 125 TATNYVQAVRDTMSCGG-CTCSRGSFIGACLGAQVGLEGIPAS 166 TAT+++ AVR +CGG C R + AC LEG+ A+ Sbjct: 5747 TATDFLLAVRALCTCGGLCEGYRHEVLKAC--EHTSLEGLHAA 5625 >Lt_contig1358 | | 1 to 9826 Length = 9826 Score = 27.7 bits (60), Expect = 4.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 Query: 126 ATNYVQAVRDTMSCGGCTCSRGSFIGACLG 155 A V A R + C GC C +F+ AC G Sbjct: 6673 AITTVAAARARIRCRGCRCRLSAFLLACTG 6584 >Lt_contig7192 | | 1 to 11355 Length = 11355 Score = 27.7 bits (60), Expect = 4.7 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 137 MSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184 MSC C+ SF G+CL + P ++S T + ESV +K + Sbjct: 3817 MSCFAIFCT--SFAGSCLSSSRMSYSSPCAYSITTTKSESVSNESKSM 3954 >Lt_contig3516 | | 1 to 1163 Length = 1163 Score = 27.7 bits (60), Expect = 4.7 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 141 GCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYES 176 G TC S ACLG Q G W+SR +R+ + Sbjct: 818 G*TCRSTSPCNACLGVQATDAGPRPMWASRPKRHRN 711 >Lt_contig6330 | | 1 to 18716 Length = 18716 Score = 27.7 bits (60), Expect = 4.7 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -3 Query: 62 ESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAALH 121 ESV++++ + +R Q ++AV I Q ++LS+ QEL V AA+H Sbjct: 14157 ESVVQRMDEASRNAKQQWERAVRHDIRQGLQSLSEVLQELRNPV----------LSAAVH 14008 Query: 122 GVL 124 G L Sbjct: 14007 GPL 13999 >Lt_contig5320 | | 1 to 3736 Length = 3736 Score = 27.3 bits (59), Expect = 6.1 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +2 Query: 137 MSCGGCTC---SRGSFIGACLGAQVGLEGIPASWS 168 +SCG CTC S + C+ + L G+ + W+ Sbjct: 3068 LSCGMCTCVSLSLSVCVSVCISGERALFGVGSGWT 3172 >Lt_contig1166 | | 1 to 10792 Length = 10792 Score = 27.3 bits (59), Expect = 6.1 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +1 Query: 137 MSCGGCTC---SRGSFIGACLGAQVGLEGIPASWS 168 +SCG CTC S + C+ + L G+ + W+ Sbjct: 2368 LSCGMCTCVSLSLSVCVSVCISGERALFGVGSGWT 2472 >Lt_contig6673 | | 1 to 7833 Length = 7833 Score = 27.3 bits (59), Expect = 6.1 Identities = 11/39 (28%), Positives = 16/39 (41%) Frame = -1 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACL 154 F A H + R + C C CSRG ++ C+ Sbjct: 1839 FLCAYHFACLMVTSAERGRKRVPCPACVCSRGWYVHVCV 1723 >Lt_contig6404 | | 1 to 2714 Length = 2714 Score = 27.3 bits (59), Expect = 6.1 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = +1 Query: 106 FVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSR----GSFIGACLGAQVGLE 161 FV G HG +T Y + +DT +CGG T R + GA G Q Sbjct: 1777 FVGVGFCRGCASHRAHGTVTRYAY-NSRKDTCACGGGTRIRSR*TSAAEGAAAGGQKRAR 1953 Query: 162 GIPASWSSRTQRYE 175 ++ SS+ RYE Sbjct: 1954 ERYSTASSQPDRYE 1995 >Lt_contig6012 | | 1 to 12168 Length = 12168 Score = 26.9 bits (58), Expect = 8.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 147 GSFIGACLGAQVGLEGIPASWSSRTQR 173 G GAC+ A V + G P+ W SR+ R Sbjct: 11586 GHAFGACMCACVRVRGSPSVWLSRSAR 11666 Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa Posted date: Sep 30, 2011 12:11 AM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,579,443 Number of Sequences: 7267 Number of extensions: 152825 Number of successful extensions: 1099 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1097 length of query: 189 length of database: 10,532,946 effective HSP length: 94 effective length of query: 95 effective length of database: 9,849,848 effective search space: 935735560 effective search space used: 935735560 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)