TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFNH01002693.1| Gregarina niphandrodes asmbl.3414, whole geno... 30 0.49 gb|AFNH01003049.1| Gregarina niphandrodes asmbl.428, whole genom... 28 1.8 gb|AFNH01002959.1| Gregarina niphandrodes asmbl.3661, whole geno... 28 1.8 gb|AFNH01002614.1| Gregarina niphandrodes asmbl.3340, whole geno... 28 2.4 gb|AFNH01002784.1| Gregarina niphandrodes asmbl.3501, whole geno... 27 4.1 gb|AFNH01002766.1| Gregarina niphandrodes asmbl.3484, whole geno... 27 4.1 gb|AFNH01002546.1| Gregarina niphandrodes asmbl.3277, whole geno... 27 4.1 gb|AFNH01002300.1| Gregarina niphandrodes asmbl.3047, whole geno... 27 4.1 gb|AFNH01000572.1| Gregarina niphandrodes asmbl.1512, whole geno... 27 4.1 gb|AFNH01000661.1| Gregarina niphandrodes asmbl.1593, whole geno... 27 5.4 gb|AFNH01000108.1| Gregarina niphandrodes asmbl.1095, whole geno... 27 5.4 gb|AFNH01002763.1| Gregarina niphandrodes asmbl.3481, whole geno... 26 7.0 gb|AFNH01002673.1| Gregarina niphandrodes asmbl.3397, whole geno... 26 7.0 gb|AFNH01001653.1| Gregarina niphandrodes asmbl.2457, whole geno... 26 7.0 gb|AFNH01002989.1| Gregarina niphandrodes asmbl.374, whole genom... 26 9.2 gb|AFNH01002357.1| Gregarina niphandrodes asmbl.3101, whole geno... 26 9.2 gb|AFNH01000147.1| Gregarina niphandrodes asmbl.113, whole genom... 26 9.2 >gb|AFNH01002693.1| Gregarina niphandrodes asmbl.3414, whole genome shotgun sequence Length = 21100 Score = 30.0 bits (66), Expect = 0.49 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 149 FIGACLGAQVGLEGIPASW 167 FIG+CLG + GLEG P ++ Sbjct: 19379 FIGSCLGGRAGLEGTPGAF 19323 >gb|AFNH01003049.1| Gregarina niphandrodes asmbl.428, whole genome shotgun sequence Length = 1544 Score = 28.1 bits (61), Expect = 1.8 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = +1 Query: 135 DTMSCGGCTCS--RGSFIGACLGAQVGLEGIPASWSSRTQRYESVLE 179 DTM C G +C RGS G C +Q G G R + E+ E Sbjct: 1006 DTMPCVGASCVGVRGSSAGTC*RSQGGEGGQEVEVGGREEEQEAAAE 1146 >gb|AFNH01002959.1| Gregarina niphandrodes asmbl.3661, whole genome shotgun sequence Length = 23170 Score = 28.1 bits (61), Expect = 1.8 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +1 Query: 6 KLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVI 65 K + +F+ + E + A++VTQ +D C +E L A + L P L+ + Sbjct: 21685 KFGTLESFFPNESEWFLSPQFAMKVTQVSDFCSSEDLLARPCVFEKTLKVEKP--LKIPM 21858 Query: 66 RQLRDPNRKQAQDLD 80 + DP+ A D D Sbjct: 21859 ESIEDPDAVMAADTD 21903 >gb|AFNH01002614.1| Gregarina niphandrodes asmbl.3340, whole genome shotgun sequence Length = 8763 Score = 27.7 bits (60), Expect = 2.4 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +1 Query: 113 PGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 PGA + L G+L V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 4468 PGAGEGEL-GLL-----VPGVNSSVGVGG----RGLAAFVGCGSGAEAGSLGLDASWST 4614 >gb|AFNH01002784.1| Gregarina niphandrodes asmbl.3501, whole genome shotgun sequence Length = 13826 Score = 26.9 bits (58), Expect = 4.1 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 122 GVLTATNYVQAVRDTMSCGGCTCSRGSF 149 G+ A + +A+RD SC C RGSF Sbjct: 4198 GLWWAGSCGEAIRDARSCNPGACGRGSF 4115 >gb|AFNH01002766.1| Gregarina niphandrodes asmbl.3484, whole genome shotgun sequence Length = 1424 Score = 26.9 bits (58), Expect = 4.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 1303 VPGVNSSVGVGG----RGLAAFVGCGSGAEAGSLGLDASWST 1190 >gb|AFNH01002546.1| Gregarina niphandrodes asmbl.3277, whole genome shotgun sequence Length = 12938 Score = 26.9 bits (58), Expect = 4.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 12459 VPGVNSSVGVGG----RGLAAFVGCGSGAEAGSLGLDASWST 12572 Score = 25.8 bits (55), Expect = 9.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGC 142 F AA +G+ + + R TMSC GC Sbjct: 271 FAAATNGMSDPGSSLLGARSTMSCSGC 351 >gb|AFNH01002300.1| Gregarina niphandrodes asmbl.3047, whole genome shotgun sequence Length = 2073 Score = 26.9 bits (58), Expect = 4.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 1349 VPGVNSSVGVGG----RGLAAFVGCGSGAEAGSLGLDASWST 1236 >gb|AFNH01000572.1| Gregarina niphandrodes asmbl.1512, whole genome shotgun sequence Length = 1128 Score = 26.9 bits (58), Expect = 4.1 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 996 VPGVNSSVGVGG----RGLAAFVGCGSGAEAGSLGLDASWST 1109 >gb|AFNH01000661.1| Gregarina niphandrodes asmbl.1593, whole genome shotgun sequence Length = 1014 Score = 26.6 bits (57), Expect = 5.4 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 330 VPGVNSSVRVGG----RGLAAFVGCGSGAEAGSLGLDASWST 443 >gb|AFNH01000108.1| Gregarina niphandrodes asmbl.1095, whole genome shotgun sequence Length = 1185 Score = 26.6 bits (57), Expect = 5.4 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -2 Query: 130 VQAVRDTMSCGGCTCSRG--SFIGACLGAQVGLEGIPASWSS 169 V V ++ GG RG +F+G GA+ G G+ ASWS+ Sbjct: 542 VPGVNSSVGAGG----RGLAAFVGYGSGAEAGSLGLDASWST 429 >gb|AFNH01002763.1| Gregarina niphandrodes asmbl.3481, whole genome shotgun sequence Length = 9753 Score = 26.2 bits (56), Expect = 7.0 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -1 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEG 162 R + SCG C R SF CL GL G Sbjct: 5142 RQSFSCG*RRCCRLSFCSVCLRRTCGLLG 5056 >gb|AFNH01002673.1| Gregarina niphandrodes asmbl.3397, whole genome shotgun sequence Length = 9702 Score = 26.2 bits (56), Expect = 7.0 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 120 LHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIP 164 L GV +TN + + + CG TCSR + +G +V L IP Sbjct: 5364 LRGVRGSTNISRHLHHSSRCGAETCSRRGSVPGGVG-RVALSLIP 5495 >gb|AFNH01001653.1| Gregarina niphandrodes asmbl.2457, whole genome shotgun sequence Length = 3672 Score = 26.2 bits (56), Expect = 7.0 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Frame = -3 Query: 99 QELIPAVFVNTUGLPG-AFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQ 157 +E ++ N P AA G L +++V A D S SF G + Sbjct: 2617 KEFFRSITTNNFECPS*RIMAAASGALNGSDFVTAFNDRKSTHNRL--EPSFFATMTGCE 2444 Query: 158 ----VGLEGIPASWSSRTQRYES 176 V L PAS SSR +R+ S Sbjct: 2443 SQFEVDLRIAPASSSSRVKRFSS 2375 >gb|AFNH01002989.1| Gregarina niphandrodes asmbl.374, whole genome shotgun sequence Length = 1154 Score = 25.8 bits (55), Expect = 9.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 148 SFIGACLGAQVGLEGIPASWSS 169 +F+G GA+ G G+ ASWS+ Sbjct: 213 AFVGCGSGAEAGSLGLDASWST 278 >gb|AFNH01002357.1| Gregarina niphandrodes asmbl.3101, whole genome shotgun sequence Length = 35103 Score = 25.8 bits (55), Expect = 9.2 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -1 Query: 135 DTMSCGGCTCSRGSFIGACLG 155 D + CGGC CS F G +G Sbjct: 2814 DRLGCGGCECSGVDFRG*VVG 2752 >gb|AFNH01000147.1| Gregarina niphandrodes asmbl.113, whole genome shotgun sequence Length = 1007 Score = 25.8 bits (55), Expect = 9.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 148 SFIGACLGAQVGLEGIPASWSS 169 +F+G GA+ G G+ ASWS+ Sbjct: 856 AFVGCGSGAEAGSLGLDASWST 791 Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa Posted date: Sep 29, 2011 11:25 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,806,082 Number of Sequences: 3680 Number of extensions: 62875 Number of successful extensions: 379 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 379 length of query: 189 length of database: 5,120,956 effective HSP length: 89 effective length of query: 100 effective length of database: 4,793,436 effective search space: 479343600 effective search space used: 479343600 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)