TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_32                                                            32   0.83 
scaffold_64                                                            31   1.1  
scaffold_9                                                             29   4.1  
scaffold_1                                                             29   4.1  
scaffold_5                                                             29   5.4  
scaffold_106                                                           28   7.0  

>scaffold_32 
          Length = 614248

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
 Frame = -2

Query: 30     VTQNNDACVAETL--AAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHI 87
              VT  N+  + + +  A  ++ E   LNG  P   E  +  L   +  +  D     VG  
Sbjct: 383670 VTDMNNGWITQKVNQAIEKYEEAIDLNGSSPLGKEDFVDDLALTSMARLWD-----VGKS 383506

Query: 88     HQVKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRG 147
                +K   + +P E           LPG+    L       N+V AV+     GG   SR 
Sbjct: 383505 EPIKVGKA-SPTE---------GTLPGSIYFILK---YQDNFVDAVKANAMVGGDNASRA 383365

Query: 148    SFIGACLGAQVGLEG 162
                IG  LGA  G++G
Sbjct: 383364 IAIGMVLGAYHGIDG 383320


>scaffold_64 
          Length = 283747

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
 Frame = -3

Query: 30    VTQNNDACVAETL--AAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHI 87
             VT  N+  + + +  A  ++ E   LNG  P   E  +  L   +  +  D     VG  
Sbjct: 96170 VTDMNNRWITQKVNQAIEKYEEAIDLNGDSPLGKEDFVDDLALTSMARLWD-----VGKS 96006

Query: 88    HQVKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRG 147
               +K   + +P E           LPG+    L       N+V AV+     GG   SR 
Sbjct: 96005 EPIKVGKA-SPTE---------GTLPGSIYFILK---YQDNFVDAVKANAMVGGDNASRA 95865

Query: 148   SFIGACLGAQVGLEG 162
               IG  LGA  G++G
Sbjct: 95864 IAIGMVLGAYHGIDG 95820


>scaffold_9 
          Length = 2734635

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 128    NYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRT 171
              N+   +R+ + C   TC R S    CLG   G++    S SS T
Sbjct: 697505 NFPVGIRNWIVCKSSTCDRRSCSHYCLGRSRGIDSCRNSGSSST 697374


>scaffold_1 
          Length = 5926375

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 134     RDTMSCGGCTCSR--GSFIGAC 153
               RD +SCG CTCSR  G  +G C
Sbjct: 5775202 RDGISCGCCTCSRIGGLVVGYC 5775137


>scaffold_5 
          Length = 3184085

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 131    QAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPA 165
              Q +    + GG    RGS +GA LGA+ G   IP+
Sbjct: 972245 QGLLANANVGGENVHRGSIMGAILGARAGFNQIPS 972141


>scaffold_106 
          Length = 100409

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 131   QAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPA 165
             Q +    + GG    RGS +GA LGA+ G   IP+
Sbjct: 53000 QGLLANANVGGENVHRGSVMGAILGARAGFNQIPS 52896


  Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa
    Posted date:  Sep 29, 2011 10:40 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,936,773
Number of Sequences: 271
Number of extensions: 197218
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 255
length of query: 189
length of database: 26,846,802
effective HSP length: 100
effective length of query: 89
effective length of database: 26,819,702
effective search space: 2386953478
effective search space used: 2386953478
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)