TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaff...    27   6.4  

>gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold
               Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence
          Length = 4166812

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 60      ALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPA-VFVNT 109
               +L  VI  + + N+ Q Q   Q    H HQ  ++  + PQ+LI A  F NT
Sbjct: 2289655 SLAMVIEGISNKNKLQQQQQQQLNNQHQHQHHQHHQQQPQQLIGANRFTNT 2289807


  Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa
    Posted date:  Sep 29, 2011 10:07 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,306,796
Number of Sequences: 25
Number of extensions: 65728
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 23
length of query: 189
length of database: 10,339,736
effective HSP length: 94
effective length of query: 95
effective length of database: 10,337,386
effective search space: 982051670
effective search space used: 982051670
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)