TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole ... 30 1.1 gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole ... 28 5.3 gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole ... 27 7.0 >gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 30.0 bits (66), Expect = 1.1 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +3 Query: 135 DTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQ 172 ++++CGGC G +G+ LG +GL G+ + SRT+ Sbjct: 3937830 NSIACGGCGGGSGGILGSGLGIGLGL-GLDLTGGSRTR 3937940 Score = 29.3 bits (64), Expect = 1.8 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +1 Query: 8 APVVAFYAGKPE-MLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIR 66 +P ++ G E ++ R+ D R++ NND + E ++ +EH N + ++S+I Sbjct: 1110349 SPCDQYFPGASENLITRLNDTDRISNNNDRIIVEKKFYSKHIEHLKSNKTE--YIDSIIN 1110522 Query: 67 QLRDPNRKQAQD 78 + N+ +D Sbjct: 1110523 FINITNK*NIKD 1110558 Score = 27.7 bits (60), Expect = 5.3 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Frame = +3 Query: 2 DGVTKLAPVVAFY-AGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 D +T+++ VA K RVE + V +NN+ C+ E + + N P + Sbjct: 3408276 DEITRISASVALTNLAKYYNPSRVEILITVNENNEPCLLEYI-------KILSNKPPQSQ 3408434 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLP 113 + +D N + D + I ++ E LS PQ V N G+P Sbjct: 3408435 SNTTENNNKDSNIIDSSTSDIRLKLQILELLELLSNEPQ--FSEVIENINGVP 3408587 >gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 27.7 bits (60), Expect = 5.3 Identities = 11/24 (45%), Positives = 11/24 (45%) Frame = -1 Query: 136 TMSCGGCTCSRGSFIGACLGAQVG 159 T CGGC C G G C G G Sbjct: 3147701 TCGCGGCCCCGGCCSGCCGGCGCG 3147630 >gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 27.3 bits (59), Expect = 7.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRY 174 CGGC C G G C G LE P+ +++++ Sbjct: 1065688 CGGCCCGGGCCCGCCCG-*FSLEN*PSCGKPKSKKF 1065584 Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa Posted date: Sep 29, 2011 8:31 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,765,297 Number of Sequences: 6 Number of extensions: 50725 Number of successful extensions: 254 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 67 length of query: 189 length of database: 11,314,357 effective HSP length: 95 effective length of query: 94 effective length of database: 11,313,787 effective search space: 1063495978 effective search space used: 1063495978 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)