TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig801 | | 1 to 67652 43 1e-04 Cf_Contig901 | | 1 to 176845 39 0.003 Cf_Contig1009 | | 1 to 121504 35 0.036 Cf_Contig991 | | 1 to 48311 33 0.14 Cf_Contig899 | | 1 to 170923 32 0.31 Cf_Contig891 | | 1 to 103530 31 0.52 Cf_Contig1065 | | 1 to 188513 31 0.68 Cf_Contig904 | | 1 to 269533 31 0.68 Cf_Contig961 | | 1 to 58535 30 1.5 Cf_Contig638 | | 1 to 35812 30 1.5 Cf_Contig871 | | 1 to 71867 29 2.0 Cf_Contig981 | | 1 to 138730 29 2.6 Cf_Contig925 | | 1 to 101319 29 2.6 Cf_Contig367 | | 1 to 11917 29 2.6 Cf_Contig1054 | | 1 to 431369 28 3.4 Cf_Contig951 | | 1 to 69648 28 4.4 Cf_Contig876 | | 1 to 197301 28 4.4 Cf_Contig811 | | 1 to 82957 28 4.4 Cf_Contig618 | | 1 to 5662 28 4.4 Cf_Contig1057 | | 1 to 538345 28 5.8 Cf_Contig969 | | 1 to 310710 28 5.8 Cf_Contig1004 | | 1 to 65723 27 7.6 Cf_Contig972 | | 1 to 178207 27 7.6 Cf_Contig834 | | 1 to 30536 27 7.6 Cf_Contig383 | | 1 to 482 27 7.6 Cf_Contig789 | | 1 to 27447 27 9.9 Cf_Contig767 | | 1 to 53360 27 9.9 >Cf_Contig801 | | 1 to 67652 Length = 67652 Score = 43.1 bits (100), Expect = 1e-04 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +1 Query: 125 TATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184 ++ ++ + V + GG TC R +GA LGA++G+ +P W S T ++ V A ++ Sbjct: 47110 SSVSFAKGVAQAICLGGPTCQRAMLVGALLGAKLGVRHVPLDWLSATPDHKPVATMALEV 47289 >Cf_Contig901 | | 1 to 176845 Length = 176845 Score = 38.5 bits (88), Expect = 0.003 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = +3 Query: 112 LPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRT 171 LP A+ A ++ AV ++ GG C+R GA +GAQVG GIP+ + Sbjct: 139992 LPAAYYLAAR---FKNDFESAVLHAINGGGQNCARAMLTGALVGAQVGFSGIPSRFVEGL 140162 Query: 172 QRYESVLEHAKKITS 186 E +++ A + + Sbjct: 140163 TEKEELVKLANSVAN 140207 Score = 27.3 bits (59), Expect = 7.6 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +2 Query: 113 PGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGL 160 P FQ HGV ++ +V T G C C+ + C+GA +GL Sbjct: 138206 PFRFQRTAHGVWAKSD--ASVPATPMMGVCCCALVCALQECVGACIGL 138343 >Cf_Contig1009 | | 1 to 121504 Length = 121504 Score = 35.0 bits (79), Expect = 0.036 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Frame = -1 Query: 112 LPGAFQAALHGVLTATNYVQAVRD-----TMSCGGCTCSRGSFIGACLGAQVGLEGIPA- 165 L G + +HGV+ A A SCGG +RG +GA G VGL+G+ A Sbjct: 91957 LEGVLRHGVHGVVMAELARGAAAQPRQCRRCSCGGAATNRG--VGAAGGIGVGLDGVLAP 91784 Query: 166 SWSSRTQRYESVLEHAKKITSHLQ 189 +W ++ Q ++ A+ + HL+ Sbjct: 91783 AWEAKAQ----TVDEAQGMNDHLR 91724 >Cf_Contig991 | | 1 to 48311 Length = 48311 Score = 33.1 bits (74), Expect = 0.14 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Frame = +1 Query: 112 LPGAFQAALHGVLTATNYVQAVRD-----TMSCGGCTCSRGSFIGACLGAQVGLEGIPA- 165 L G + +HGV+ A A SCGG +RG +GA G VGL+G+ A Sbjct: 466 LEGVLRHGVHGVVMAELARGAAAQPRQCRRCSCGGAATNRG--VGAAGGIGVGLDGVLAP 639 Query: 166 SWSSRTQ 172 +W ++ Q Sbjct: 640 AWEAKAQ 660 >Cf_Contig899 | | 1 to 170923 Length = 170923 Score = 32.0 bits (71), Expect = 0.31 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +3 Query: 134 RDTMSCGGCTCSRGSFIGA---CLGAQVGLEGIPASWSSRTQR 173 R SC C CS G+ GA C G G PASWS +R Sbjct: 105237 RRRCSCAACPCSCGTACGAAPPCRGCPAA-RGAPASWSPAARR 105362 >Cf_Contig891 | | 1 to 103530 Length = 103530 Score = 31.2 bits (69), Expect = 0.52 Identities = 20/55 (36%), Positives = 24/55 (43%) Frame = +1 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSHL 188 R M CGG +R S A V G ASW RT RY + A ++ HL Sbjct: 49225 RRRMDCGGVRATRCSPSSAAATTWVTATGRGASWWLRTARYRWLRRCACEVRLHL 49389 >Cf_Contig1065 | | 1 to 188513 Length = 188513 Score = 30.8 bits (68), Expect = 0.68 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +1 Query: 98 PQELIPAVFVNTUGLPGAFQAAL-HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGA 156 P IP + + LP ++AA HG + A+R C GC C+ GAC A Sbjct: 174490 PAFYIPLLSLAHCPLPCVWRAAATHGCADHDDAAAALRCVRRCAGCLCA-ACGDGACGCA 174666 Query: 157 QVGLEGIPASWSSRTQRY 174 +VG G W +R R+ Sbjct: 174667 RVGACG----WRARGARW 174708 >Cf_Contig904 | | 1 to 269533 Length = 269533 Score = 30.8 bits (68), Expect = 0.68 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = -1 Query: 98 PQELIPAVFVNTUGLPGAFQAA-LHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGA 156 P IP + + LP ++AA HG + A+R C GC C+ GAC A Sbjct: 221674 PAFYIPLLSLPHCPLPCVWRAAGTHGCADDDDAAAALRCVRRCAGCLCA-ACGDGACGCA 221498 Query: 157 QVGLEGIPASWSSRTQRY 174 +VG G W +R R+ Sbjct: 221497 RVGACG----WRARGARW 221456 >Cf_Contig961 | | 1 to 58535 Length = 58535 Score = 29.6 bits (65), Expect = 1.5 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +2 Query: 115 AFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEG 162 A AALH AT+ V V+ +SCG + S S + CL VGL+G Sbjct: 47456 ASAAALHCCCAATDVV-VVQLVLSCGLISASLLSTVPDCLCCSVGLKG 47596 >Cf_Contig638 | | 1 to 35812 Length = 35812 Score = 29.6 bits (65), Expect = 1.5 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +1 Query: 114 GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEG 162 G AALHG L +A +S GG RG A G+ G+ G Sbjct: 18532 GRHDAALHGFLQGAGVTEAAEHHVSSGGAAEHRGRAPPARRGSTTGVAG 18678 >Cf_Contig871 | | 1 to 71867 Length = 71867 Score = 29.3 bits (64), Expect = 2.0 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = +2 Query: 111 GLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSR 170 G A+ GV +T A +SC CT SR SF+ G I + W+ R Sbjct: 13328 GSTAAYGCGSAGVTASTESTSAPSTAVSCSDCT*SRPSFVS*VTRTSQG-PSISSGWTGR 13504 >Cf_Contig981 | | 1 to 138730 Length = 138730 Score = 28.9 bits (63), Expect = 2.6 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = +2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLE 179 C GC+CS G+ C A L P S T ++ E Sbjct: 114923 CAGCSCSAGTTAAPCCSAPAALPQRPRSKGCSTPSWQGFRE 115045 >Cf_Contig925 | | 1 to 101319 Length = 101319 Score = 28.9 bits (63), Expect = 2.6 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 Query: 69 RDPNRKQAQDLDQAVVGHIHQVKENLSKTPQEL 101 RD ++Q Q +V H H+ +E ++ TP++L Sbjct: 49265 RDAQKQQQQQ*QHPIVQHTHKKEETITTTPKQL 49167 >Cf_Contig367 | | 1 to 11917 Length = 11917 Score = 28.9 bits (63), Expect = 2.6 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = -3 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 R T +CGGC S S GAC + P W + QR Sbjct: 5150 RTTAACGGCARSTASCRGACARRR------PGRWGATPQR 5049 >Cf_Contig1054 | | 1 to 431369 Length = 431369 Score = 28.5 bits (62), Expect = 3.4 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +3 Query: 90 VKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCS 145 V+ N + TP+ L+PA T G+ QA+ +TA +C CTCS Sbjct: 30042 VRAN*AATPRLLLPAAPTTTTGVTSPSQASGRPTVTAGR---------TCTRCTCS 30182 >Cf_Contig951 | | 1 to 69648 Length = 69648 Score = 28.1 bits (61), Expect = 4.4 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 14/49 (28%) Frame = -2 Query: 132 AVRDTMSCGGCTCSRGSF--------------IGACLGAQVGLEGIPAS 166 AVR+ C GC C G G C A +GL G+P S Sbjct: 10160 AVRELQGCCGCRCGGGDVRPPPAGRRGDAGERPGGCRAACLGLSGLPRS 10014 >Cf_Contig876 | | 1 to 197301 Length = 197301 Score = 28.1 bits (61), Expect = 4.4 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 136 TMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRY 174 T G T RGS I +G G+ G PA RTQ+Y Sbjct: 154315 TAGSGTTTPPRGSTIHRLVGFCPGIRGAPAQIHIRTQQY 154199 >Cf_Contig811 | | 1 to 82957 Length = 82957 Score = 28.1 bits (61), Expect = 4.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 136 TMSCGGCTCSRGSFIGACLGAQVGLEGI 163 T CG C +RG + GA +GAQ G+ Sbjct: 20214 TSRCGRCWAARGWYCGAAVGAQPAGGGV 20297 >Cf_Contig618 | | 1 to 5662 Length = 5662 Score = 28.1 bits (61), Expect = 4.4 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Frame = -3 Query: 98 PQELIPAVFVNTUGL-----PGAFQAALHGVLTAT--NYVQAVRDTMSCGGCTCSRGSFI 150 P+ L+P + V L GAF A+HG++ A A + GCTC + Sbjct: 2987 PRPLLPPLMVLVAALLRIVCGGAF--AVHGIVAAAAGRVAGAAVELWFLPGCTCDCAEAV 2814 Query: 151 GACLGAQVG 159 GA VG Sbjct: 2813 GAAAATAVG 2787 >Cf_Contig1057 | | 1 to 538345 Length = 538345 Score = 27.7 bits (60), Expect = 5.8 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = +1 Query: 126 ATNYVQAVRDTMSCGGCTCSRGSFIGACLGA-QVGLEGIPASWSSRTQRYESVLEH 180 A + R + SC RG+F G C GA + G P++ R R + H Sbjct: 86863 AARTTHSARSSTSCSATGTRRGTFPGVCAGACRAGASARPSAG*QRQHRRGQDVRH 87030 >Cf_Contig969 | | 1 to 310710 Length = 310710 Score = 27.7 bits (60), Expect = 5.8 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +1 Query: 140 GGCTCSRGSFIGACLGAQ 157 GGC C G GAC GAQ Sbjct: 40306 GGCLCDEGWVGGACAGAQ 40359 >Cf_Contig1004 | | 1 to 65723 Length = 65723 Score = 27.3 bits (59), Expect = 7.6 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVGLEGIPAS 166 SC G TC+R S +G GA G AS Sbjct: 24060 SCAGSTCTRSSCVGCSSGAVSLCSGTSAS 24146 >Cf_Contig972 | | 1 to 178207 Length = 178207 Score = 27.3 bits (59), Expect = 7.6 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 134 RDTMSCGGCTCSRGSFIGACL 154 R T S C CS GS+ G CL Sbjct: 71107 RSTFSLSTCRCSLGSYSGRCL 71045 >Cf_Contig834 | | 1 to 30536 Length = 30536 Score = 27.3 bits (59), Expect = 7.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 132 AVRDTMSCGGCTCSRGSFIGAC 153 A RD + GGC RG+ +GAC Sbjct: 9725 AQRDALCGGGCEEGRGACVGAC 9790 >Cf_Contig383 | | 1 to 482 Length = 482 Score = 27.3 bits (59), Expect = 7.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 132 AVRDTMSCGGCTCSRGSFIGAC 153 A RD + GGC RG+ +GAC Sbjct: 333 AQRDALCGGGCEEGRGACVGAC 398 >Cf_Contig789 | | 1 to 27447 Length = 27447 Score = 26.9 bits (58), Expect = 9.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 120 LHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGA 152 L G+L+AT V A T + G C C R S GA Sbjct: 22031 LRGILSATFVVDAADTTTTDGCCCCWRCSDSGA 21933 >Cf_Contig767 | | 1 to 53360 Length = 53360 Score = 26.9 bits (58), Expect = 9.9 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +3 Query: 104 AVFVNTUGLPGAFQAALHGVLTATNYVQA--VRDTMSCGGCTCSRGSFIGACLG 155 A+ VN G G A VL V+A + D +CG TC+ G + G G Sbjct: 4713 ALGVNADGAGGTAVAGNLFVLAGLLVVEAEALHDVSACGALTCAAGGWGGGAEG 4874 Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa Posted date: Sep 29, 2011 8:09 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,579,688 Number of Sequences: 1089 Number of extensions: 173113 Number of successful extensions: 1391 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 181 Number of HSP's successfully gapped in prelim test: 72 Number of HSP's that attempted gapping in prelim test: 1005 Number of HSP's gapped (non-prelim): 719 length of query: 189 length of database: 12,349,441 effective HSP length: 95 effective length of query: 94 effective length of database: 12,245,986 effective search space: 1151122684 effective search space used: 1151122684 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)