TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/A.rara/genome.fa 3231 sequences; 1,450,095 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ADNL01002213.1| Astrammina rara contig02646, whole genome sho... 27 0.21 gb|ADNL01003178.1| Astrammina rara contig00097, whole genome sho... 27 0.35 gb|ADNL01002721.1| Astrammina rara contig03210, whole genome sho... 25 0.78 gb|ADNL01001900.1| Astrammina rara contig02257, whole genome sho... 23 3.9 gb|ADNL01000023.1| Astrammina rara contig00024, whole genome sho... 23 3.9 gb|ADNL01002274.1| Astrammina rara contig02716, whole genome sho... 23 5.1 gb|ADNL01001448.1| Astrammina rara contig01719, whole genome sho... 22 6.6 gb|ADNL01000269.1| Astrammina rara contig00280, whole genome sho... 22 6.6 gb|ADNL01000079.1| Astrammina rara contig00082, whole genome sho... 22 6.6 gb|ADNL01003145.1| Astrammina rara contig02529, whole genome sho... 22 8.6 >gb|ADNL01002213.1| Astrammina rara contig02646, whole genome shotgun sequence Length = 3281 Score = 27.3 bits (59), Expect = 0.21 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 127 TNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWS 168 T + + R + SC CTC +G G +V EG+ S S Sbjct: 577 TCHCKCARTSQSCEKCTCVGDCEMGLAKGREVHREGLLGSTS 452 Score = 26.9 bits (58), Expect = 0.27 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 133 VRDTMSCGGCTCSRGSFIGA 152 VR ++CGG CSR S +G+ Sbjct: 967 VRQVVACGGRACSRSSSLGS 1026 >gb|ADNL01003178.1| Astrammina rara contig00097, whole genome shotgun sequence Length = 3915 Score = 26.6 bits (57), Expect = 0.35 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 13 FYAGKPEMLGRVEDAVRVTQNNDACV 38 FY +PEML +E + NN CV Sbjct: 1469 FYDDRPEMLKSIEKCFNTSINNKRCV 1546 >gb|ADNL01002721.1| Astrammina rara contig03210, whole genome shotgun sequence Length = 3911 Score = 25.4 bits (54), Expect = 0.78 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 33 NNDACVAETLAAARFLEH 50 +ND CV E L ARFL+H Sbjct: 2083 SNDTCVRE*LHFARFLKH 2030 >gb|ADNL01001900.1| Astrammina rara contig02257, whole genome shotgun sequence Length = 175 Score = 23.1 bits (48), Expect = 3.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +2 Query: 152 ACLGAQVGLEGIPASWSSRT 171 AC+G VG +G+P SW + T Sbjct: 122 ACVG--VGHDGLPXSWLAST 175 >gb|ADNL01000023.1| Astrammina rara contig00024, whole genome shotgun sequence Length = 11445 Score = 23.1 bits (48), Expect = 3.9 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = +2 Query: 120 LHGVLTATNYVQAVRDTMSCGGCTCSR 146 + + T N V ++ SCG TC+R Sbjct: 617 IFSIFTIWNVVAPLKCLFSCGTLTCTR 697 >gb|ADNL01002274.1| Astrammina rara contig02716, whole genome shotgun sequence Length = 1013 Score = 22.7 bits (47), Expect = 5.1 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSS 169 C GCT G + C+G + L G+ S SS Sbjct: 8 CLGCTSGLGCDLDFCMGCGLAL-GVVDSMSS 97 >gb|ADNL01001448.1| Astrammina rara contig01719, whole genome shotgun sequence Length = 264 Score = 22.3 bits (46), Expect = 6.6 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -1 Query: 14 YAGKPEMLGRVEDAVRVTQNND 35 YAG + L +ED ++ QN D Sbjct: 129 YAGLGDGLDEIEDFIKDAQNRD 64 >gb|ADNL01000269.1| Astrammina rara contig00280, whole genome shotgun sequence Length = 4054 Score = 22.3 bits (46), Expect = 6.6 Identities = 8/22 (36%), Positives = 10/22 (45%) Frame = +2 Query: 130 VQAVRDTMSCGGCTCSRGSFIG 151 V V CG C C G ++G Sbjct: 1712 VDVVHGKGVCGVCDCCEGMYVG 1777 >gb|ADNL01000079.1| Astrammina rara contig00082, whole genome shotgun sequence Length = 9033 Score = 22.3 bits (46), Expect = 6.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEG 162 CG C GS +G C G+ VG G Sbjct: 8507 CGSCVGCCGSCVGCC-GSCVGCCG 8439 Score = 22.3 bits (46), Expect = 6.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEG 162 CG C GS +G C G+ VG G Sbjct: 8465 CGSCVGCCGSCVGCC-GSCVGCCG 8397 Score = 21.9 bits (45), Expect = 8.6 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CG C GS +G C G+ VG Sbjct: 8423 CGSCVGCCGSCVGCC-GSCVG 8364 >gb|ADNL01003145.1| Astrammina rara contig02529, whole genome shotgun sequence Length = 1002 Score = 21.9 bits (45), Expect = 8.6 Identities = 8/17 (47%), Positives = 8/17 (47%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLG 155 C C C GS CLG Sbjct: 657 CISCVCGGGSVRALCLG 607 Database: /users/rg/didac/GENOMES/A.rara/genome.fa Posted date: Sep 29, 2011 8:09 PM Number of letters in database: 1,450,095 Number of sequences in database: 3231 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 289,781 Number of Sequences: 3231 Number of extensions: 3622 Number of successful extensions: 30 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 28 length of query: 189 length of database: 483,365 effective HSP length: 69 effective length of query: 120 effective length of database: 260,426 effective search space: 31251120 effective search space used: 31251120 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 45 (21.9 bits)