TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|FR824081.1| Albugo laibachii Nc14, genomic contig CONTIG_36_... 80 1e-15 emb|FR824189.1| Albugo laibachii Nc14, genomic contig CONTIG_144... 68 4e-12 emb|FR824237.1| Albugo laibachii Nc14, genomic contig CONTIG_192... 68 4e-12 emb|FR824075.1| Albugo laibachii Nc14, genomic contig CONTIG_30_... 33 0.12 emb|FR824653.1| Albugo laibachii Nc14, genomic contig CONTIG_657... 28 3.9 emb|FR824054.1| Albugo laibachii Nc14, genomic contig CONTIG_9_N... 28 5.0 >emb|FR824081.1| Albugo laibachii Nc14, genomic contig CONTIG_36_NC14_v4_137019_239 Length = 137019 Score = 79.7 bits (195), Expect = 1e-15 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 1/178 (0%) Frame = +2 Query: 1 MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 +D + L PVVA YAG + +V+ V++ + AA LE IL A Sbjct: 113066 IDVLALLPPVVALYAGTDHLFDKVKKLVQIFSRGSRVLDMATVAAYILEQIILGASILEA 113245 Query: 61 LESVIR-QLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAA 119 L IR L P +++ +I++ + E I + N LP Sbjct: 113246 LRRSIRCSLLSPRQRK----------YIYKAFTKAQLSSHEAI-LKYGNEGNLPRGLYTI 113392 Query: 120 LHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESV 177 L + +T+Y AVR+ + GG +C R F+GAC AQ G+ IP+ W ++T ++ESV Sbjct: 113393 LQPLFVSTSYTNAVRENIIGGGRSCRRAMFLGACFAAQDGIRSIPSMWLAQTPQFESV 113566 >emb|FR824189.1| Albugo laibachii Nc14, genomic contig CONTIG_144_NC14_v4_63583_160 Length = 63583 Score = 67.8 bits (164), Expect = 4e-12 Identities = 47/184 (25%), Positives = 81/184 (44%) Frame = -1 Query: 1 MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 +D + + P++ YAG P++ +VE+ VR+ + + + AA LE IL A Sbjct: 31600 IDVLVLIPPLIVLYAGTPQLFTKVENYVRMFYSGTYVLDAAMIAAFILEQIILGASILDA 31421 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAAL 120 L +R R +R+++ A+ Q S+ P + + + Sbjct: 31420 LRKAMRCDRLTSRQRS-----AIYKSFTQ-----SQNPTHHVLQKYGKYGSKSRGIYTII 31271 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180 + Y A+R+ + GG +C R F+GAC AQ GL+ IP W ++T +E + Sbjct: 31270 QPLFAENEYTAAIRENILGGGRSCRRAIFLGACFAAQEGLQCIPREWIAKTPFFEFLEAD 31091 Query: 181 AKKI 184 K I Sbjct: 31090 IKAI 31079 >emb|FR824237.1| Albugo laibachii Nc14, genomic contig CONTIG_192_NC14_v4_49459_130 Length = 49459 Score = 67.8 bits (164), Expect = 4e-12 Identities = 47/184 (25%), Positives = 81/184 (44%) Frame = +1 Query: 1 MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 +D + + P++ YAG P++ +VE+ VR+ + + + AA LE IL A Sbjct: 12112 IDVLVLIPPLIVLYAGTPQLFTKVENYVRMFYSGTYVLDAAMIAAFILEQIILGASILDA 12291 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAAL 120 L +R R +R+++ A+ Q S+ P + + + Sbjct: 12292 LRKAMRCDRLTSRQRS-----AIYKSFTQ-----SQNPTHHVLQKYGKYGSKSRGIYTII 12441 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180 + Y A+R+ + GG +C R F+GAC AQ GL+ IP W ++T +E + Sbjct: 12442 QPLFAENEYTAAIRENILGGGRSCRRAIFLGACFAAQEGLQCIPREWIAKTPFFEFLEAD 12621 Query: 181 AKKI 184 K I Sbjct: 12622 IKAI 12633 >emb|FR824075.1| Albugo laibachii Nc14, genomic contig CONTIG_30_NC14_v4_147583_240 Length = 147583 Score = 33.1 bits (74), Expect = 0.12 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -2 Query: 64 VIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQE 100 VIR+ R PNR+Q ++ + GHIHQV L K P + Sbjct: 38403 VIRRYRIPNREQYHAYNR-LAGHIHQVVHRLKKRPAD 38296 >emb|FR824653.1| Albugo laibachii Nc14, genomic contig CONTIG_657_NC14_v4_8323_231 Length = 8323 Score = 28.1 bits (61), Expect = 3.9 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 12/55 (21%) Frame = +1 Query: 132 AVRDTMSCGGCTCSR-----GSFIGACLGAQVG-------LEGIPASWSSRTQRY 174 A D SCG +C GS G+CLG+ VG + S +T RY Sbjct: 1432 AAVDFSSCGSISCCSHFIFCGSLCGSCLGSAVGHAASVIVASSVTGSTRRKTSRY 1596 >emb|FR824054.1| Albugo laibachii Nc14, genomic contig CONTIG_9_NC14_v4_237024_240 Length = 237024 Score = 27.7 bits (60), Expect = 5.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 166 SWSSRTQRYESVLEHAKKITSH 187 SWSSR Y S+ E A+K+ H Sbjct: 98071 SWSSRWDSYSSLAERARKVRLH 98136 Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa Posted date: Sep 29, 2011 5:28 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,652,821 Number of Sequences: 3816 Number of extensions: 91009 Number of successful extensions: 449 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 305 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 382 length of query: 189 length of database: 10,913,379 effective HSP length: 94 effective length of query: 95 effective length of database: 10,554,675 effective search space: 1002694125 effective search space used: 1002694125 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)