TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                    27   7.8  

>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 14      IKKAPIITE--ECYRN-GYHPSKWELAQVLLNGIWKPY 48
               +++ P++ E  ECY   G +P  W L Q LL  +W+ +
Sbjct: 1589512 LERGPLVWEQAECYVGMGNYPDSWNLLQRLLLLLWRRF 1589399


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,119,828
Number of Sequences: 11
Number of extensions: 100896
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 78
length of query: 257
length of database: 7,429,315
effective HSP length: 96
effective length of query: 161
effective length of database: 7,428,259
effective search space: 1195949699
effective search space used: 1195949699
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)