TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.1013 of Sphaeroforma arctica JP610                          32   2.0  
supercont1.882 of Sphaeroforma arctica JP610                           31   3.5  
supercont1.1135 of Sphaeroforma arctica JP610                          30   5.9  
supercont1.127 of Sphaeroforma arctica JP610                           30   5.9  

>supercont1.1013 of Sphaeroforma arctica JP610
          Length = 26287

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
 Frame = +1

Query: 6     NIFEEEKPIKKAPIITEECYRNGYHPSKWELAQVLLNGIWKPYKFKSYMQYKSR------ 59
             ++F   KPI     I  ECY N  H S WE         ++ +    +M+  +R      
Sbjct: 25156 SVFRSCKPIASCRCIWRECYPNCPHQSGWEANVTE*ISAYENH*M--HMRLNTRLWHIVV 25329

Query: 60    -ERLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDR 102
              ERL L ++      IL DD + QE     L N N+  K +++R
Sbjct: 25330 IERLRLTSNAY---*ILYDDGSTQERFADMLANGNDEFKFIRNR 25452


>supercont1.882 of Sphaeroforma arctica JP610
          Length = 34137

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 27/105 (25%), Positives = 43/105 (40%)
 Frame = -3

Query: 96    EKSVQDRPMVLICGSFTUPPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGGD 155
             ++ V+DR ++  C  F  P F+DKM                     +EI+P+  W+  G 
Sbjct: 25234 DRGVEDRDVLTACIKFVVPKFKDKM-----------------NTPAEEINPSASWHPTGT 25106

Query: 156   EISLCYRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKV 200
               S    QP +    RE+ + +    P  TIP    +   NF+ V
Sbjct: 25105 PASW---QPTS---TRELSEQMHAAGPIRTIP----QRSTNFHHV 25001


>supercont1.1135 of Sphaeroforma arctica JP610
          Length = 21729

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = -2

Query: 78    DQTNQEVSLYDLF-----NSNNNEKSVQDRPMVLICG 109
             +QTN++ S+Y ++     N NNN K   +R + L+CG
Sbjct: 13442 EQTNKK*SVYSIYLWPSKNVNNNMKCENERKIPLVCG 13332


>supercont1.127 of Sphaeroforma arctica JP610
          Length = 142785

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 79    QTNQEVSLYDLFNSNNNEKSVQDRPMVLICGSFTUPPFRD 118
             +TN+ +S     N N NE  V +R +V+IC  F    + D
Sbjct: 90392 KTNERISTRSASNMNLNEIGVLERSIVIICAQFVN*QYPD 90273


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,436,616
Number of Sequences: 15618
Number of extensions: 684418
Number of successful extensions: 2346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 1697
length of query: 257
length of database: 40,529,447
effective HSP length: 107
effective length of query: 150
effective length of database: 38,858,321
effective search space: 5828748150
effective search space used: 5828748150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)