TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_14                                                       29   5.7  
PHYCAscaffold_139                                                      28   9.6  
PHYCAscaffold_126                                                      28   9.6  
PHYCAscaffold_33                                                       28   9.6  

>PHYCAscaffold_14
          Length = 1100894

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 154   GDEISLCYRQPKTMEDRREIIKDLKEYAPFCTIP 187
             G ++SLCYR+ +T  D+    +++K+    C +P
Sbjct: 24226 GGKVSLCYREMRTAMDKTASSRNIKQELG*CNMP 24125


>PHYCAscaffold_139
          Length = 29350

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 56    YKSR-ERLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRPMVL 106
             Y+S+ E +  ++DT+ PDA  + ++   +  +  LF SN+N  S++  P+ L
Sbjct: 25781 YQSKTEPVEPESDTKMPDASDVSEERESKKWIKQLFKSNSNWISMKIHPIKL 25936


>PHYCAscaffold_126
          Length = 72628

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 56    YKSR-ERLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRPMVL 106
             Y+S+ E +  ++DT+ PDA  + ++   +  +  LF SN+N  S++  P+ L
Sbjct: 40306 YQSKTEPVEPESDTKMPDASDVSEERESKKWIKQLFKSNSNWISMKIHPIKL 40461


>PHYCAscaffold_33
          Length = 640966

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 8      FEEEK--PIKKAP-IITEECYRNGYHPSKWELAQVLLNGIWKPYKFKSY 53
              +EE K  P+  AP +I  +    G+HP  W L + LL+ IWK  +   Y
Sbjct: 138688 YEEMKASPVLMAPSLIHRDPLNTGHHPRTWALIRRLLD-IWKRLQVSYY 138831


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,247,639
Number of Sequences: 917
Number of extensions: 265217
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 346
length of query: 257
length of database: 21,341,249
effective HSP length: 103
effective length of query: 154
effective length of database: 21,246,798
effective search space: 3272006892
effective search space used: 3272006892
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)