TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5699  |  | 1 to 17841                                         31   0.71 

>Lt_contig5699  |  | 1 to 17841
          Length = 17841

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 45   WKPYKFKSYMQYKSRERLNLQAD-TQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRP 103
            WK Y ++S       E L++ A  T    ++  DD+      +YDLF + +    VQ  P
Sbjct: 3292 WKNYSYRSSSSSNDSESLSVDAGRTPMSSSVSTDDKPVNSQHIYDLFWTGSGRVEVQFGP 3471

Query: 104  MV 105
             V
Sbjct: 3472 TV 3477


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,052,650
Number of Sequences: 7267
Number of extensions: 132443
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of query: 257
length of database: 10,532,946
effective HSP length: 97
effective length of query: 160
effective length of database: 9,828,047
effective search space: 1572487520
effective search space used: 1572487520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)